从高光谱图像合成数字组织学图像的条件生成对抗网络 (cGAN)。

IF 1.2 4区 工程技术 Q3 MATHEMATICS, INTERDISCIPLINARY APPLICATIONS
Fluctuation and Noise Letters Pub Date : 2023-02-01 Epub Date: 2023-04-06 DOI:10.1117/12.2653715
Ling Ma, Jeremy Sherey, Doreen Palsgrove, Baowei Fei
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引用次数: 0

摘要

高光谱成像(HSI)已在各种数字病理学应用中得到证实。然而,高光谱图像固有的高维度使得病理学家很难将信息可视化。本研究的目的是开发一种方法,将血红素和伊红(H&E)染色载玻片的高光谱图像转换为自然色 RGB 组织学图像,以方便可视化。高光谱图像是用自动显微成像系统在 40 倍放大率下获得的,并通过各种因素进行降采样,以生成相当于不同放大率的数据。高分辨率数字组织学 RGB 图像经裁剪后与相应的高光谱图像配准,作为地面实况。对条件生成对抗网络(cGAN)进行训练,以输出组织学组织样本的自然彩色 RGB 图像。生成的合成 RGB 具有与真实 RGB 相似的颜色和清晰度。利用预训练网络,分别使用真实 RGB 和合成 RGB 进行图像分类。使用 HSI 合成 RGB 对肿瘤和正常组织进行分类的准确率和 AUC 值与真实 RGB 相当,但略高于真实 RGB。所提出的方法可以缩短两种成像模式的采集时间,同时让病理学家获得 HSI 的高信息密度和 RGB 的高质量可视化。这项研究表明,HSI 有可能替代目前基于 RGB 的病理成像,从而使 HSI 成为组织病理学诊断的可行工具。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Conditional Generative Adversarial Network (cGAN) for Synthesis of Digital Histologic Images from Hyperspectral Images.

Hyperspectral imaging (HSI) has been demonstrated in various digital pathology applications. However, the intrinsic high dimensionality of hyperspectral images makes it difficult for pathologists to visualize the information. The aim of this study is to develop a method to transform hyperspectral images of hemoxylin & eosin (H&E)-stained slides to natural-color RGB histologic images for easy visualization. Hyperspectral images were obtained at 40× magnification with an automated microscopic imaging system and downsampled by various factors to generate data equivalent to different magnifications. High-resolution digital histologic RGB images were cropped and registered to the corresponding hyperspectral images as the ground truth. A conditional generative adversarial network (cGAN) was trained to output natural color RGB images of the histological tissue samples. The generated synthetic RGBs have similar color and sharpness to real RGBs. Image classification was implemented using the real and synthetic RGBs, respectively, with a pretrained network. The classification of tumor and normal tissue using the HSI-synthesized RGBs yielded a comparable but slightly higher accuracy and AUC than the real RGBs. The proposed method can reduce the acquisition time of two imaging modalities while giving pathologists access to the high information density of HSI and the quality visualization of RGBs. This study demonstrated that HSI may provide a potentially better alternative to current RGB-based pathologic imaging and thus make HSI a viable tool for histopathological diagnosis.

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来源期刊
Fluctuation and Noise Letters
Fluctuation and Noise Letters 工程技术-数学跨学科应用
CiteScore
2.90
自引率
22.20%
发文量
43
审稿时长
>12 weeks
期刊介绍: Fluctuation and Noise Letters (FNL) is unique. It is the only specialist journal for fluctuations and noise, and it covers that topic throughout the whole of science in a completely interdisciplinary way. High standards of refereeing and editorial judgment are guaranteed by the selection of Editors from among the leading scientists of the field. FNL places equal emphasis on both fundamental and applied science and the name "Letters" is to indicate speed of publication, rather than a limitation on the lengths of papers. The journal uses on-line submission and provides for immediate on-line publication of accepted papers. FNL is interested in interdisciplinary articles on random fluctuations, quite generally. For example: noise enhanced phenomena including stochastic resonance; 1/f noise; shot noise; fluctuation-dissipation; cardiovascular dynamics; ion channels; single molecules; neural systems; quantum fluctuations; quantum computation; classical and quantum information; statistical physics; degradation and aging phenomena; percolation systems; fluctuations in social systems; traffic; the stock market; environment and climate; etc.
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