v型神经毒剂安全处理分子动力学建模及光谱特性预测。

IF 3.1 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Koufou Antonios, Chalaris Michail
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引用次数: 0

摘要

建立了V型药剂中三种主要代表物质的详细分子势模型,并根据现有的实验结果进行了测试。进行了分子动力学模拟,首先重点阐明了这些高毒性有机磷化合物的热力学和输运性质。同时,对它们的分子间结构进行了深入的研究,并进行了振动谱计算。利用经典模拟计算了密度、汽化焓、恒压热容等关键热力学量以及粘度和自扩散系数等输运性质。通过对径向分布函数探索分子水平的结构组织,提供了对分子位点和原子的短程相互作用和排序以及配位数的洞察。此外,通过对总偶极自相关函数的傅里叶反变换,得到了与振动态有关的红外光谱,揭示了红外指纹区域的特征振动模式,用于官能团识别。这种综合方法提供了对环境条件下V型化学战剂行为的关键分子洞察力,有助于预测建模和安全处理这些有害物质。该研究首次对VX、RVX和CVX进行了全面的原子模拟,通过改进的基于opls的势能模型提供了详细的热力学、输运和光谱分析。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Molecular dynamics modeling and spectroscopic property prediction of V-type nerve agents for safe handling

Detailed molecular potential models of three major representative substances of V type agents were created and tested against the scarce available experimental results. Molecular Dynamics simulations were conducted, and first main focus was elucidating thermodynamic and transport properties of these highly toxic organophosphorus compounds. Alongside, an in-depth investigation of their intermolecular structure and vibrational spectra calculations were performed. Using classical simulations key thermodynamic quantities such as density, enthalpy of vaporization, heat capacity under constant pressure as well as transport properties such as viscosity and self-diffusion coefficient were computed. Molecular level structural organization was probed through pair radial distribution functions, providing insight into short range interactions and ordering of molecular sites and atoms, as well as coordination numbers. Furthermore, infrared spectra concerning vibrational states were derived from inverse Fourier transform of the total dipole autocorrelation function, revealing signature vibrational modes in the infrared fingerprint region for functional group identification. This combined approach offers a critical molecular insight into the behavior of V type chemical warfare agents under ambient conditions, contributing to predictive modelling and safe handling of these hazardous substances. This study presents the first comprehensive atomistic simulation of VX, RVX, and CVX, offering detailed thermodynamic, transport, and spectroscopic insights through refined OPLS-based potential models.

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来源期刊
Journal of Computer-Aided Molecular Design
Journal of Computer-Aided Molecular Design 生物-计算机:跨学科应用
CiteScore
8.00
自引率
8.60%
发文量
56
审稿时长
3 months
期刊介绍: The Journal of Computer-Aided Molecular Design provides a form for disseminating information on both the theory and the application of computer-based methods in the analysis and design of molecules. The scope of the journal encompasses papers which report new and original research and applications in the following areas: - theoretical chemistry; - computational chemistry; - computer and molecular graphics; - molecular modeling; - protein engineering; - drug design; - expert systems; - general structure-property relationships; - molecular dynamics; - chemical database development and usage.
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