几何降阶建模(GROM)及其在淋巴功能建模中的应用。

IF 3.7 3区 医学 Q2 NEUROSCIENCES
Andreas Solheim , Geir Ringstad , Per Kristian Eide , Kent-Andre Mardal
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引用次数: 0

摘要

大脑的计算建模已经成为理解大脑如何清除代谢废物的关键部分,但目前的方法仍然无法实现大规模的针对患者的建模。我们介绍了一种利用大脑几何计算模型中的模型降阶技术来减轻数值模拟中涉及的计算成本的新方法。使用基于磁共振成像的图像配准方法,我们计算了脑间映射,这使得以前在其他几何上计算的解可以映射到新的几何上。我们在两个典型的淋巴功能建模的例子问题上研究了这种方法,应用于101个人类患者的MRI数据集。我们讨论了该方法的适用性,当应用于患者没有已知的神经系统疾病,以及患者诊断为特发性常压脑积水显示显著扩大的脑室。在我们的两个示例问题中,与全顺序问题相比,我们实现了750倍以上的加速,同时引入了相对较小的额外系统组装开销。简化后的解在大多数情况下以小于10%的误差恢复全阶解。意义说明:在许多领域,模型降阶是实现高通量数值模拟的关键技术,但在很大程度上尚未用于大脑的生物医学建模。在这项工作中,我们引入了一种新的技术,用于构建简化表征,整合对来自MRI的其他大脑几何图形进行的模拟。使用这种技术,我们可以利用以前解决方案的数据集来加速对新几何形状的模拟,使特定于患者的建模更加可行。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Geometry Reduced Order Modeling (GROM) with application to modeling of glymphatic function
Computational modeling of the brain has become a key part of understanding how the brain clears metabolic waste, but patient-specific modeling on a significant scale is still out of reach with current methods. We introduce a novel approach for leveraging model order reduction techniques in computational models of brain geometries to alleviate computational costs involved in numerical simulations. Using image registration methods based on magnetic resonance imaging, we compute inter-brain mappings which allow previously computed solutions on other geometries to be mapped on to a new geometry. We investigate this approach on two example problems typical of modeling of glymphatic function, applied to a dataset of 101 MRI of human patients. We discuss the applicability of the method when applied to a patient with no known neurological disease, as well as a patient diagnosed with idiopathic Normal Pressure Hydrocephalus displaying significantly enlarged ventricles. In each of our two example problems, we achieve a speedup of more 750 times compared to the full order problem, while introducing a comparably small additional system assembly overhead. The reduced solutions recover the full order solution with an error of less than 10% in most cases.
Statement of significance: In many fields, model order reduction is a key technique in enabling high-throughput numerical simulations, but remains largely unexploited for biomedical modeling of the brain. In this work, we introduce a novel technique for building reduced representations integrating simulations performed on other brain geometries derived from MRI. Using this technique, we may leverage a dataset of previous solutions to accelerate simulations on new geometries, making patient-specific modeling more feasible.
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来源期刊
Brain Research Bulletin
Brain Research Bulletin 医学-神经科学
CiteScore
6.90
自引率
2.60%
发文量
253
审稿时长
67 days
期刊介绍: The Brain Research Bulletin (BRB) aims to publish novel work that advances our knowledge of molecular and cellular mechanisms that underlie neural network properties associated with behavior, cognition and other brain functions during neurodevelopment and in the adult. Although clinical research is out of the Journal''s scope, the BRB also aims to publish translation research that provides insight into biological mechanisms and processes associated with neurodegeneration mechanisms, neurological diseases and neuropsychiatric disorders. The Journal is especially interested in research using novel methodologies, such as optogenetics, multielectrode array recordings and life imaging in wild-type and genetically-modified animal models, with the goal to advance our understanding of how neurons, glia and networks function in vivo.
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