维格列汀的实验与计算结合研究:光谱、电子结构、MD和与EGFR、VEGFR2和HER2抗癌靶点的对接

IF 3.1 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Tadeusz W. Inglot
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引用次数: 0

摘要

本研究结合实验和计算方法研究了维格列汀(vildagliptin, VILD)的分子几何和物理化学性质。利用UV-Vis、荧光光谱、FTIR/Raman、圆二色、DFT、分子对接和动力学模拟等方法,获得了一个与x射线晶体学数据密切相关的可靠分子模型。该模型能够准确地预测振动频率和系统地分配振动模式。包括Hirshfeld表面作图、分子静电势、HOMO-LUMO能量学、Fukui指数和自然种群分析在内的分析为VILD的反应性提供了清晰的见解,而NBO和TD-DFT研究阐明了关键的稳定相互作用和高能电子跃迁。NTO可视化进一步阐明了轨道动力学,圆二色性测量解释了棉花效应的分子基础。此外,分子对接和分子动力学模拟证实了与EGFR、VEGFR2和HER2受体蛋白形成稳定的复合物,表明其具有潜在的抗癌活性。本出版物的主要目的是填补我们对VILD分子行为理解的现有空白,并为合理的药物设计和改进的治疗策略提供坚实的基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Combined experimental and computational investigation of vildagliptin: spectroscopy, electronic structure, MD and Docking to EGFR, VEGFR2, and HER2 anticancer targets

This study combines experimental and computational approaches to investigate the molecular geometry and physicochemical properties of vildagliptin (VILD). Using methods such as UV-Vis, spectrofluorimetry, FTIR/Raman, and circular dichroism alongside DFT, molecular docking, and dynamics simulations, a reliable molecular model was obtained that aligns closely with X-ray crystallographic data. This model enabled accurate predictions of vibrational frequencies and systematic assignments of vibrational modes. Analyses, including Hirshfeld surface mapping, molecular electrostatic potential, HOMO-LUMO energetics, Fukui indices, and natural population analysis, provided clear insights into VILD’s reactivity, while NBO and TD-DFT studies elucidated key stabilizing interactions and high-energy electronic transitions. NTO visualization further clarified orbital dynamics, and circular dichroism measurements explained the molecular basis of the Cotton effect. Additionally, molecular docking and molecular dynamics simulations confirmed the formation of stable complexes with EGFR, VEGFR2, and HER2 receptor proteins, suggesting potential anticancer activity. The main purpose of this publication is to fill existing gaps in our understanding of VILD’s molecular behavior and offer a robust foundation for rational drug design and improved therapeutic strategies.

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来源期刊
Journal of Computer-Aided Molecular Design
Journal of Computer-Aided Molecular Design 生物-计算机:跨学科应用
CiteScore
8.00
自引率
8.60%
发文量
56
审稿时长
3 months
期刊介绍: The Journal of Computer-Aided Molecular Design provides a form for disseminating information on both the theory and the application of computer-based methods in the analysis and design of molecules. The scope of the journal encompasses papers which report new and original research and applications in the following areas: - theoretical chemistry; - computational chemistry; - computer and molecular graphics; - molecular modeling; - protein engineering; - drug design; - expert systems; - general structure-property relationships; - molecular dynamics; - chemical database development and usage.
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