通过分子表征学习对纯有机物进行高精度物理性质预测:连接数据与发现

IF 11.9 1区 材料科学 Q1 CHEMISTRY, PHYSICAL
Qi Ou, Hongshuai Wang, Minyang Zhuang, Shangqian Chen, Lele Liu, Ning Wang, Zhifeng Gao
{"title":"通过分子表征学习对纯有机物进行高精度物理性质预测:连接数据与发现","authors":"Qi Ou, Hongshuai Wang, Minyang Zhuang, Shangqian Chen, Lele Liu, Ning Wang, Zhifeng Gao","doi":"10.1038/s41524-025-01720-4","DOIUrl":null,"url":null,"abstract":"<p>The escalating energy crisis has spurred extensive research into organic compounds for energy-efficient applications, taking advantage of their environmental friendliness, cost-effective synthesis, and adaptable molecular structures. Traditional trial-and-error methods for discovering highly functional organic compounds are expensive and time-consuming. We employed a 3D transformer-based molecular representation learning algorithm to create the Org-Mol pre-trained model, using 60 million semi-empirically optimized small organic molecule structures. After fine-tuning with public experimental data, the model can accurately predict various physical properties of pure organics, with test set <i>R</i><sup>2</sup> values exceeding 0.92. These fine-tuned models are used in high-throughput screening among millions of ester molecules to identify novel immersion coolants, resulting in the experimental validation of two promising candidates. This work not only demonstrates the potential of Org-Mol in predicting bulk properties for pure organic compounds but also paves the way for the rational and efficient development of ideal candidates for energy-saving materials.</p>","PeriodicalId":19342,"journal":{"name":"npj Computational Materials","volume":"22 1","pages":""},"PeriodicalIF":11.9000,"publicationDate":"2025-07-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"High-accuracy physical property prediction for pure organics via molecular representation learning: bridging data to discovery\",\"authors\":\"Qi Ou, Hongshuai Wang, Minyang Zhuang, Shangqian Chen, Lele Liu, Ning Wang, Zhifeng Gao\",\"doi\":\"10.1038/s41524-025-01720-4\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>The escalating energy crisis has spurred extensive research into organic compounds for energy-efficient applications, taking advantage of their environmental friendliness, cost-effective synthesis, and adaptable molecular structures. Traditional trial-and-error methods for discovering highly functional organic compounds are expensive and time-consuming. We employed a 3D transformer-based molecular representation learning algorithm to create the Org-Mol pre-trained model, using 60 million semi-empirically optimized small organic molecule structures. After fine-tuning with public experimental data, the model can accurately predict various physical properties of pure organics, with test set <i>R</i><sup>2</sup> values exceeding 0.92. These fine-tuned models are used in high-throughput screening among millions of ester molecules to identify novel immersion coolants, resulting in the experimental validation of two promising candidates. This work not only demonstrates the potential of Org-Mol in predicting bulk properties for pure organic compounds but also paves the way for the rational and efficient development of ideal candidates for energy-saving materials.</p>\",\"PeriodicalId\":19342,\"journal\":{\"name\":\"npj Computational Materials\",\"volume\":\"22 1\",\"pages\":\"\"},\"PeriodicalIF\":11.9000,\"publicationDate\":\"2025-07-11\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"npj Computational Materials\",\"FirstCategoryId\":\"88\",\"ListUrlMain\":\"https://doi.org/10.1038/s41524-025-01720-4\",\"RegionNum\":1,\"RegionCategory\":\"材料科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"npj Computational Materials","FirstCategoryId":"88","ListUrlMain":"https://doi.org/10.1038/s41524-025-01720-4","RegionNum":1,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

摘要

不断升级的能源危机促使人们广泛研究有机化合物的节能应用,利用它们的环境友好性、低成本合成和适应性强的分子结构。发现高功能有机化合物的传统试错法既昂贵又耗时。我们使用基于3D变压器的分子表示学习算法来创建Org-Mol预训练模型,使用6000万个半经验优化的小有机分子结构。经公开实验数据微调后,该模型能准确预测纯有机物的各种物性,测试集R2值超过0.92。这些微调模型用于在数百万酯分子中进行高通量筛选,以确定新型浸入式冷却剂,从而对两种有希望的候选冷却剂进行实验验证。这项工作不仅证明了Org-Mol在预测纯有机化合物体性质方面的潜力,而且为合理有效地开发节能材料的理想候选材料铺平了道路。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

High-accuracy physical property prediction for pure organics via molecular representation learning: bridging data to discovery

High-accuracy physical property prediction for pure organics via molecular representation learning: bridging data to discovery

The escalating energy crisis has spurred extensive research into organic compounds for energy-efficient applications, taking advantage of their environmental friendliness, cost-effective synthesis, and adaptable molecular structures. Traditional trial-and-error methods for discovering highly functional organic compounds are expensive and time-consuming. We employed a 3D transformer-based molecular representation learning algorithm to create the Org-Mol pre-trained model, using 60 million semi-empirically optimized small organic molecule structures. After fine-tuning with public experimental data, the model can accurately predict various physical properties of pure organics, with test set R2 values exceeding 0.92. These fine-tuned models are used in high-throughput screening among millions of ester molecules to identify novel immersion coolants, resulting in the experimental validation of two promising candidates. This work not only demonstrates the potential of Org-Mol in predicting bulk properties for pure organic compounds but also paves the way for the rational and efficient development of ideal candidates for energy-saving materials.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
npj Computational Materials
npj Computational Materials Mathematics-Modeling and Simulation
CiteScore
15.30
自引率
5.20%
发文量
229
审稿时长
6 weeks
期刊介绍: npj Computational Materials is a high-quality open access journal from Nature Research that publishes research papers applying computational approaches for the design of new materials and enhancing our understanding of existing ones. The journal also welcomes papers on new computational techniques and the refinement of current approaches that support these aims, as well as experimental papers that complement computational findings. Some key features of npj Computational Materials include a 2-year impact factor of 12.241 (2021), article downloads of 1,138,590 (2021), and a fast turnaround time of 11 days from submission to the first editorial decision. The journal is indexed in various databases and services, including Chemical Abstracts Service (ACS), Astrophysics Data System (ADS), Current Contents/Physical, Chemical and Earth Sciences, Journal Citation Reports/Science Edition, SCOPUS, EI Compendex, INSPEC, Google Scholar, SCImago, DOAJ, CNKI, and Science Citation Index Expanded (SCIE), among others.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信