{"title":"小麦TaDES1基因家族对生物和非生物胁迫的全基因组鉴定及表达分析","authors":"Wenjie Kan, Yameng Gao, Ziqi Wang, Zhu Yang, Yuan Cheng, Dacheng Wang, Zhiwei Li, Caiguo Tang, Lifang Wu","doi":"10.1002/fsn3.70504","DOIUrl":null,"url":null,"abstract":"<p>L-Cysteine desulfhydrase (DES1), a key enzyme in eukaryotes, catalyzes the synthesis of hydrogen sulfide (H<sub>2</sub>S), which is a gaseous signaling molecule. However, the genes encoding DES1 enzymes in wheat, one of the world's most important crop species, have yet to be fully characterized. This study offers a comprehensive analysis of the wheat TaDES1 gene family and delves into its potential functions. We identified a total of 18 <i>TaDES1</i> genes, located across 13 chromosomes, categorized them into four subfamilies, and comprehensively analyzed their physicochemical properties. Furthermore, three DES1 gene families (HvDES1, OsDES1, and ZmDES1) were identified in three Poaceae species to explore the evolutionary relationships of TaDES1 and its homologs. The results indicated that segmental duplication drove the expansion of the TaDES1 family, which experienced strong purifying selection. Promoter <i>cis</i>-elements and gene ontology (GO) enrichment analysis revealed the significant roles of this gene in the stress response, phytohormone regulation, and plant growth. miRNA target prediction analysis further explored the regulatory relationships. Transcriptomic data revealed that TaDES1 members are responsive to abiotic stresses, biotic stresses, and exogenous abscisic acid (ABA) treatment. The qPCR (RT–qPCR) results also demonstrated that the TaDES1 gene is responsive to multiple stresses. Co-expression network analysis emphasized the importance of key <i>TaDES1</i> genes in stress responses. Finally, simple sequence repeats (SSRs) within the TaDES1 family were predicted, and variation analysis of three key <i>TaDES1</i> genes and their homologs across ten wheat cultivars was performed to explore their potential in wheat breeding.</p>","PeriodicalId":12418,"journal":{"name":"Food Science & Nutrition","volume":"13 7","pages":""},"PeriodicalIF":3.8000,"publicationDate":"2025-07-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/fsn3.70504","citationCount":"0","resultStr":"{\"title\":\"Genome-Wide Identification and Expression Analysis of TaDES1 Gene Family Responded to Biotic and Abiotic Stress in Wheat (Triticum aestivum L.)\",\"authors\":\"Wenjie Kan, Yameng Gao, Ziqi Wang, Zhu Yang, Yuan Cheng, Dacheng Wang, Zhiwei Li, Caiguo Tang, Lifang Wu\",\"doi\":\"10.1002/fsn3.70504\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>L-Cysteine desulfhydrase (DES1), a key enzyme in eukaryotes, catalyzes the synthesis of hydrogen sulfide (H<sub>2</sub>S), which is a gaseous signaling molecule. However, the genes encoding DES1 enzymes in wheat, one of the world's most important crop species, have yet to be fully characterized. This study offers a comprehensive analysis of the wheat TaDES1 gene family and delves into its potential functions. We identified a total of 18 <i>TaDES1</i> genes, located across 13 chromosomes, categorized them into four subfamilies, and comprehensively analyzed their physicochemical properties. Furthermore, three DES1 gene families (HvDES1, OsDES1, and ZmDES1) were identified in three Poaceae species to explore the evolutionary relationships of TaDES1 and its homologs. The results indicated that segmental duplication drove the expansion of the TaDES1 family, which experienced strong purifying selection. Promoter <i>cis</i>-elements and gene ontology (GO) enrichment analysis revealed the significant roles of this gene in the stress response, phytohormone regulation, and plant growth. miRNA target prediction analysis further explored the regulatory relationships. Transcriptomic data revealed that TaDES1 members are responsive to abiotic stresses, biotic stresses, and exogenous abscisic acid (ABA) treatment. The qPCR (RT–qPCR) results also demonstrated that the TaDES1 gene is responsive to multiple stresses. Co-expression network analysis emphasized the importance of key <i>TaDES1</i> genes in stress responses. Finally, simple sequence repeats (SSRs) within the TaDES1 family were predicted, and variation analysis of three key <i>TaDES1</i> genes and their homologs across ten wheat cultivars was performed to explore their potential in wheat breeding.</p>\",\"PeriodicalId\":12418,\"journal\":{\"name\":\"Food Science & Nutrition\",\"volume\":\"13 7\",\"pages\":\"\"},\"PeriodicalIF\":3.8000,\"publicationDate\":\"2025-07-08\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://onlinelibrary.wiley.com/doi/epdf/10.1002/fsn3.70504\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Food Science & Nutrition\",\"FirstCategoryId\":\"97\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1002/fsn3.70504\",\"RegionNum\":2,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"FOOD SCIENCE & TECHNOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Food Science & Nutrition","FirstCategoryId":"97","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/fsn3.70504","RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"FOOD SCIENCE & TECHNOLOGY","Score":null,"Total":0}
引用次数: 0
摘要
l -半胱氨酸脱硫酶(DES1)是真核生物中催化硫化氢(H2S)合成的关键酶,硫化氢是一种气体信号分子。然而,作为世界上最重要的作物之一,小麦中编码DES1酶的基因尚未被完全表征。本研究对小麦TaDES1基因家族进行了全面分析,并对其潜在功能进行了深入研究。我们共鉴定出18个TaDES1基因,分布在13条染色体上,将其分为4个亚家族,并对其理化性质进行了综合分析。在3种禾本科植物中鉴定出3个DES1基因家族(HvDES1、OsDES1和ZmDES1),探讨TaDES1及其同源物的进化关系。结果表明,片段重复推动了TaDES1家族的扩增,该家族经历了强烈的纯化选择。启动子顺式元件和基因本体(GO)富集分析揭示了该基因在逆境响应、植物激素调控和植物生长中的重要作用。miRNA靶标预测分析进一步探讨了调控关系。转录组学数据显示,TaDES1成员对非生物胁迫、生物胁迫和外源脱落酸(ABA)处理均有反应。qPCR (RT-qPCR)结果也表明,TaDES1基因对多种胁迫有响应。共表达网络分析强调了关键的TaDES1基因在应激反应中的重要性。最后,对TaDES1家族的简单重复序列(SSRs)进行了预测,并对三个关键的TaDES1基因及其同源基因在10个小麦品种间的变异进行了分析,以探索其在小麦育种中的潜力。
Genome-Wide Identification and Expression Analysis of TaDES1 Gene Family Responded to Biotic and Abiotic Stress in Wheat (Triticum aestivum L.)
L-Cysteine desulfhydrase (DES1), a key enzyme in eukaryotes, catalyzes the synthesis of hydrogen sulfide (H2S), which is a gaseous signaling molecule. However, the genes encoding DES1 enzymes in wheat, one of the world's most important crop species, have yet to be fully characterized. This study offers a comprehensive analysis of the wheat TaDES1 gene family and delves into its potential functions. We identified a total of 18 TaDES1 genes, located across 13 chromosomes, categorized them into four subfamilies, and comprehensively analyzed their physicochemical properties. Furthermore, three DES1 gene families (HvDES1, OsDES1, and ZmDES1) were identified in three Poaceae species to explore the evolutionary relationships of TaDES1 and its homologs. The results indicated that segmental duplication drove the expansion of the TaDES1 family, which experienced strong purifying selection. Promoter cis-elements and gene ontology (GO) enrichment analysis revealed the significant roles of this gene in the stress response, phytohormone regulation, and plant growth. miRNA target prediction analysis further explored the regulatory relationships. Transcriptomic data revealed that TaDES1 members are responsive to abiotic stresses, biotic stresses, and exogenous abscisic acid (ABA) treatment. The qPCR (RT–qPCR) results also demonstrated that the TaDES1 gene is responsive to multiple stresses. Co-expression network analysis emphasized the importance of key TaDES1 genes in stress responses. Finally, simple sequence repeats (SSRs) within the TaDES1 family were predicted, and variation analysis of three key TaDES1 genes and their homologs across ten wheat cultivars was performed to explore their potential in wheat breeding.
期刊介绍:
Food Science & Nutrition is the peer-reviewed journal for rapid dissemination of research in all areas of food science and nutrition. The Journal will consider submissions of quality papers describing the results of fundamental and applied research related to all aspects of human food and nutrition, as well as interdisciplinary research that spans these two fields.