Chaoqian Zhu, Peng Peng, Yuanguang Liu, Yichao Zhao, Ran Cheng, Yang Liu, Jun Yin
{"title":"建立新的胰腺腺癌预后模型预测预后并指导免疫治疗。","authors":"Chaoqian Zhu, Peng Peng, Yuanguang Liu, Yichao Zhao, Ran Cheng, Yang Liu, Jun Yin","doi":"10.1080/10255842.2025.2525979","DOIUrl":null,"url":null,"abstract":"<p><p>Pancreatic adenocarcinoma (PAAD) remains one of the most lethal malignant tumors, with poor prognosis and limited treatment options. This study aims to explore the role of butyrate metabolism-related genes (BMRGs) in PAAD to improve diagnostic and prognostic strategies. The study analyzed PAAD based on transcriptomic and clinical data obtained from the Gene Expression Omnibus (GEO) and The Cancer Genome Atlas (TCGA) databases. Through the construction of protein-protein interaction (PPI) networks and LASSO Cox regression, characteristic genes were selected to develop a risk model related to butyrate metabolism (BMRS). This model effectively divided patients into high BMRS and low BMRS groups. Kaplan-Meier (K-M) analysis showed a significant difference in overall survival rates between the two groups. ROC curves and nomograms including clinical features and BMRS demonstrated strong predictive capabilities. Functional enrichment analysis (including Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG)) revealed key pathways, such as pancreatic secretion and immune-related processes. Additionally, the two BMRS groups showed different immune cell infiltration patterns, and several potential therapeutic drugs were determined through drug sensitivity prediction. Co-expression network analysis further revealed 20 genes related to biological processes such as keratinization and nucleosome assembly. In summary, this study highlights the clinical significance of BMRGs in PAAD and provides new insights into risk stratification and potential targets for personalized treatment.</p>","PeriodicalId":50640,"journal":{"name":"Computer Methods in Biomechanics and Biomedical Engineering","volume":" ","pages":"1-18"},"PeriodicalIF":1.7000,"publicationDate":"2025-07-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Construction of a novel prognostic model for pancreatic adenocarcinoma to predict prognosis and guide immunotherapy.\",\"authors\":\"Chaoqian Zhu, Peng Peng, Yuanguang Liu, Yichao Zhao, Ran Cheng, Yang Liu, Jun Yin\",\"doi\":\"10.1080/10255842.2025.2525979\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Pancreatic adenocarcinoma (PAAD) remains one of the most lethal malignant tumors, with poor prognosis and limited treatment options. This study aims to explore the role of butyrate metabolism-related genes (BMRGs) in PAAD to improve diagnostic and prognostic strategies. The study analyzed PAAD based on transcriptomic and clinical data obtained from the Gene Expression Omnibus (GEO) and The Cancer Genome Atlas (TCGA) databases. Through the construction of protein-protein interaction (PPI) networks and LASSO Cox regression, characteristic genes were selected to develop a risk model related to butyrate metabolism (BMRS). This model effectively divided patients into high BMRS and low BMRS groups. Kaplan-Meier (K-M) analysis showed a significant difference in overall survival rates between the two groups. ROC curves and nomograms including clinical features and BMRS demonstrated strong predictive capabilities. Functional enrichment analysis (including Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG)) revealed key pathways, such as pancreatic secretion and immune-related processes. Additionally, the two BMRS groups showed different immune cell infiltration patterns, and several potential therapeutic drugs were determined through drug sensitivity prediction. Co-expression network analysis further revealed 20 genes related to biological processes such as keratinization and nucleosome assembly. In summary, this study highlights the clinical significance of BMRGs in PAAD and provides new insights into risk stratification and potential targets for personalized treatment.</p>\",\"PeriodicalId\":50640,\"journal\":{\"name\":\"Computer Methods in Biomechanics and Biomedical Engineering\",\"volume\":\" \",\"pages\":\"1-18\"},\"PeriodicalIF\":1.7000,\"publicationDate\":\"2025-07-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computer Methods in Biomechanics and Biomedical Engineering\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://doi.org/10.1080/10255842.2025.2525979\",\"RegionNum\":4,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computer Methods in Biomechanics and Biomedical Engineering","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1080/10255842.2025.2525979","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
Construction of a novel prognostic model for pancreatic adenocarcinoma to predict prognosis and guide immunotherapy.
Pancreatic adenocarcinoma (PAAD) remains one of the most lethal malignant tumors, with poor prognosis and limited treatment options. This study aims to explore the role of butyrate metabolism-related genes (BMRGs) in PAAD to improve diagnostic and prognostic strategies. The study analyzed PAAD based on transcriptomic and clinical data obtained from the Gene Expression Omnibus (GEO) and The Cancer Genome Atlas (TCGA) databases. Through the construction of protein-protein interaction (PPI) networks and LASSO Cox regression, characteristic genes were selected to develop a risk model related to butyrate metabolism (BMRS). This model effectively divided patients into high BMRS and low BMRS groups. Kaplan-Meier (K-M) analysis showed a significant difference in overall survival rates between the two groups. ROC curves and nomograms including clinical features and BMRS demonstrated strong predictive capabilities. Functional enrichment analysis (including Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG)) revealed key pathways, such as pancreatic secretion and immune-related processes. Additionally, the two BMRS groups showed different immune cell infiltration patterns, and several potential therapeutic drugs were determined through drug sensitivity prediction. Co-expression network analysis further revealed 20 genes related to biological processes such as keratinization and nucleosome assembly. In summary, this study highlights the clinical significance of BMRGs in PAAD and provides new insights into risk stratification and potential targets for personalized treatment.
期刊介绍:
The primary aims of Computer Methods in Biomechanics and Biomedical Engineering are to provide a means of communicating the advances being made in the areas of biomechanics and biomedical engineering and to stimulate interest in the continually emerging computer based technologies which are being applied in these multidisciplinary subjects. Computer Methods in Biomechanics and Biomedical Engineering will also provide a focus for the importance of integrating the disciplines of engineering with medical technology and clinical expertise. Such integration will have a major impact on health care in the future.