在南极半岛沉积物中发现丰富的MAGs中存在微生物反硝化和甲醇氧化的潜力。

IF 2.2 4区 生物学 Q3 MICROBIOLOGY
Katie E Howland, Hannah J Nygaard, Andrew D Steen, Kenneth M Halanych, Andrew R Mahon, Deric R Learman
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引用次数: 0

摘要

反硝化作用导致了环境系统中大量氮的流失,改变了微生物组成并影响了其他生物地球化学循环。在南极洲,气温上升导致海洋沉积物中有机物沉积增加,这可以显著改变微生物介导的反硝化作用。为了研究这些沉积物中驱动n循环的微生物的遗传潜力,在南极洲威德尔海的两个地点收集了底栖沉积物岩心。从每个位点的多个深度提取DNA,从而重建了75个高质量的宏基因组组装基因组(MAGs)。其中47个mag含有参与反硝化的还原酶。在两个地点和所有深度,除在一个地点3-6 cmbsf深度未被发现外,属于甲基酸菌属的mag含量最多。这些甲基酸菌MAGs的丰度表明硝酸盐驱动的甲醇氧化在两个位点的潜力。Beggiatoaceae和Sedimenticolaceae的MAGs具有产生反硝化中间体的遗传潜力,并具有将硝酸盐异化还原为氨(DNRA)的完整途径。酸化菌和达达菌内的MAGs具有完成最后反硝化步骤的潜力。基于MAGs,南极半岛沉积物群落具有完全反硝化和通过一个联合体将硝酸盐异化还原为氨(DNRA)的潜力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Potential for microbial denitrification coupled with methanol oxidation found in abundant MAGs in Antarctic Peninsula sediments.

Denitrification accounts for a substantial nitrogen loss from environmental systems, shifting microbial composition and impacting other biogeochemical cycles. In Antarctica, rising temperatures cause increased organic matter deposition in marine sediments, which can significantly alter microbially mediated denitrification. To examine the genetic potential of microorganisms driving N-cycling in these sediments, benthic sediment cores were collected at two sites in the Weddell Sea, Antarctica. DNA was extracted from multiple depths at each site, resulting in the reconstruction of 75 high-quality metagenome-assembled genomes (MAGs). Forty-seven of these MAGs contained reductases involved in denitrification. MAGs belonging to the genus Methyloceanibacter were the most abundant MAGs at both sites and all depths, except depth 3-6 cmbsf at one site, where they were not identified. The abundance of these Methyloceanibacter MAGs suggests the potential for nitrate-driven methanol oxidation at both sites. MAGs belonging to Beggiatoaceae and Sedimenticolaceae were found to have the genetic potential to produce intermediates in denitrification and the complete pathway for dissimilatory nitrate reduction to ammonia. MAGs within Acidimicrobiia and Dadabacteria had the potential to complete the final denitrification step. Based on MAGs, Antarctic peninsula sediment communities have the potential for complete denitrification and dissimilatory nitrate reduction to ammonia via a consortium.

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来源期刊
Fems Microbiology Letters
Fems Microbiology Letters 生物-微生物学
CiteScore
4.30
自引率
0.00%
发文量
112
审稿时长
1.9 months
期刊介绍: FEMS Microbiology Letters gives priority to concise papers that merit rapid publication by virtue of their originality, general interest and contribution to new developments in microbiology. All aspects of microbiology, including virology, are covered. 2019 Impact Factor: 1.987, Journal Citation Reports (Source Clarivate, 2020) Ranking: 98/135 (Microbiology) The journal is divided into eight Sections: Physiology and Biochemistry (including genetics, molecular biology and ‘omic’ studies) Food Microbiology (from food production and biotechnology to spoilage and food borne pathogens) Biotechnology and Synthetic Biology Pathogens and Pathogenicity (including medical, veterinary, plant and insect pathogens – particularly those relating to food security – with the exception of viruses) Environmental Microbiology (including ecophysiology, ecogenomics and meta-omic studies) Virology (viruses infecting any organism, including Bacteria and Archaea) Taxonomy and Systematics (for publication of novel taxa, taxonomic reclassifications and reviews of a taxonomic nature) Professional Development (including education, training, CPD, research assessment frameworks, research and publication metrics, best-practice, careers and history of microbiology) If you are unsure which Section is most appropriate for your manuscript, for example in the case of transdisciplinary studies, we recommend that you contact the Editor-In-Chief by email prior to submission. Our scope includes any type of microorganism - all members of the Bacteria and the Archaea and microbial members of the Eukarya (yeasts, filamentous fungi, microbial algae, protozoa, oomycetes, myxomycetes, etc.) as well as all viruses.
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