HybridGWOSPEA2ABC:一种用于基因表达数据分析和癌症分类的新型特征选择算法

IF 1.7 4区 医学 Q3 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
Ashimjyoti Nath, Chandan Jyoti Kumar, Sanjib Kr Kalita, Thipendra Pal Singh, Renu Dhir
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引用次数: 0

摘要

背景与目的:DNA微阵列技术在生物学研究中具有显著的影响,特别是在癌症的分类与诊断以及基因特征与功能的研究方面。随着癌症相关数据的广泛收集,人们越来越关注通过基因模式分析和识别癌症类型分类的特定基因来开发优化的机器学习(ML)技术。癌症诊断和治疗的相关基因选择面临着重大挑战,这需要高效的特征选择方法。方法:将灰狼优化算法(GWO)、强度帕累托进化算法2 (SPEA2)和人工蜂群算法(ABC)相结合,提出一种新的基因选择混合算法。这种方法结合了智能和进化计算来提高解的多样性、收敛效率以及对高维基因表达数据的探索和开发能力。在不同的癌症数据集上,将该算法与使用五种不同分类器的五种生物启发算法进行了比较,以验证其在特征选择方面的有效性。结果:与传统的生物启发算法相比,HybridGWOSPEA2ABC算法在识别相关癌症生物标志物方面表现出优越的性能。与基准算法的比较表明,混合方法在解决高维数据挑战和推进癌症分类的基因选择问题方面具有增强的能力。结论:新型杂交算法通过保持解的多样性、高效收敛到最优解、改进搜索空间的探索和利用,提高了算法的性能。本研究提供了对癌症分类相关基因的更好理解,促进了疾病检测和分类的有效方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
HybridGWOSPEA2ABC: a novel feature selection algorithm for gene expression data analysis and cancer classification.

Background and objective: DNA micro-array technology has a remarkable impact on biological research, particularly in categorizing and diagnosing cancer and studying gene features and functions. With the availability of extensive collections of cancer-related data, there has been an increased focus on developing optimized Machine Learning (ML) techniques for cancer classification through gene pattern analysis and the identification of specific genes for cancer type categorization. The relevant gene selection for diagnosing and treating cancer poses a significant challenge, which requires efficient feature selection methods.

Methods: This study introduces a novel hybrid algorithm, for gene selection, integrating the Grey Wolf Optimizer (GWO), Strength Pareto Evolutionary Algorithm 2 (SPEA2), and Artificial Bee Colony (ABC). This combination uses intelligence and evolutionary computation to enhance solution diversity, convergence efficiency, and exploration and exploitation capabilities in high-dimensional gene expression data. The algorithm was compared with five bio-inspired algorithms using five different classifiers on various cancer datasets to validate its effectiveness in feature selection.

Results: The HybridGWOSPEA2ABC algorithm demonstrated superior performance in identifying relevant cancer biomarkers compared to the conventional bio-inspired algorithms. Comparison with the benchmark algorithms has shown the hybrid approach's enhanced capability in addressing the challenges of high-dimensional data and advancing the gene selection problem for cancer classification.

Conclusion: The novel hybridization algorithm enhances performance by maintaining solution diversity, efficiently converging to optimal solutions, and improving the exploration and exploitation of the search space. This study provides a better understanding of relevant genes for cancer classification and promotes effective methodologies for disease detection and classification.

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来源期刊
CiteScore
4.10
自引率
6.20%
发文量
179
审稿时长
4-8 weeks
期刊介绍: The primary aims of Computer Methods in Biomechanics and Biomedical Engineering are to provide a means of communicating the advances being made in the areas of biomechanics and biomedical engineering and to stimulate interest in the continually emerging computer based technologies which are being applied in these multidisciplinary subjects. Computer Methods in Biomechanics and Biomedical Engineering will also provide a focus for the importance of integrating the disciplines of engineering with medical technology and clinical expertise. Such integration will have a major impact on health care in the future.
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