{"title":"基于转录组的癌症相关成纤维细胞在肺腺癌预后和治疗中的作用。","authors":"Yinhe Feng, Jianming Zeng, Xiaoli Zhong, Chunfang Zeng","doi":"10.1080/10255842.2025.2476186","DOIUrl":null,"url":null,"abstract":"<p><p>Cancer-associated fibroblasts (CAFs) are related to drug resistance and prognosis of tumor patients. This study aimed to investigate the relationship between prognosis and drug treatment response in patients with CAF and lung adenocarcinoma (LUAD). The data pertaining to LUAD patients were obtained from The Cancer Genome Atlas-LUAD and GSE68465 datasets. Four different algorithms were used to quantify CAF infiltration and stromal scores. Weighted gene network co-expression analysis was used to identify CAF-related modules and hub genes. Univariate Cox regression analysis, least absolute shrinkage and selection operator regression analysis, and multivariate Cox regression analysis were used to construct CAF signatures, whose ability to predict prognosis was verified by individual CAF scores. The CAF-related signature of eight genes was constructed, and the CAF score was calculated. The prognosis of LUAD patients with high CAF scores was significantly worse than that of patients with low CAF scores. CAF score was an independent risk factor for LUAD prognosis. Patients with high CAF scores were sensitive to some chemotherapy drugs, and in most cases, they were non-responsive to immunotherapy. Eight-gene CAF signature may predict LUAD patient prognosis and evaluate clinical responses to chemotherapy and immunotherapy, enabling individualized treatment for the patients.</p>","PeriodicalId":50640,"journal":{"name":"Computer Methods in Biomechanics and Biomedical Engineering","volume":" ","pages":"1-16"},"PeriodicalIF":1.7000,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Transcriptome-based insights into the role of cancer-associated fibroblasts in lung adenocarcinoma prognosis and therapy.\",\"authors\":\"Yinhe Feng, Jianming Zeng, Xiaoli Zhong, Chunfang Zeng\",\"doi\":\"10.1080/10255842.2025.2476186\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Cancer-associated fibroblasts (CAFs) are related to drug resistance and prognosis of tumor patients. This study aimed to investigate the relationship between prognosis and drug treatment response in patients with CAF and lung adenocarcinoma (LUAD). The data pertaining to LUAD patients were obtained from The Cancer Genome Atlas-LUAD and GSE68465 datasets. Four different algorithms were used to quantify CAF infiltration and stromal scores. Weighted gene network co-expression analysis was used to identify CAF-related modules and hub genes. Univariate Cox regression analysis, least absolute shrinkage and selection operator regression analysis, and multivariate Cox regression analysis were used to construct CAF signatures, whose ability to predict prognosis was verified by individual CAF scores. The CAF-related signature of eight genes was constructed, and the CAF score was calculated. The prognosis of LUAD patients with high CAF scores was significantly worse than that of patients with low CAF scores. CAF score was an independent risk factor for LUAD prognosis. Patients with high CAF scores were sensitive to some chemotherapy drugs, and in most cases, they were non-responsive to immunotherapy. Eight-gene CAF signature may predict LUAD patient prognosis and evaluate clinical responses to chemotherapy and immunotherapy, enabling individualized treatment for the patients.</p>\",\"PeriodicalId\":50640,\"journal\":{\"name\":\"Computer Methods in Biomechanics and Biomedical Engineering\",\"volume\":\" \",\"pages\":\"1-16\"},\"PeriodicalIF\":1.7000,\"publicationDate\":\"2025-03-12\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computer Methods in Biomechanics and Biomedical Engineering\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://doi.org/10.1080/10255842.2025.2476186\",\"RegionNum\":4,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computer Methods in Biomechanics and Biomedical Engineering","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1080/10255842.2025.2476186","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
引用次数: 0
摘要
肿瘤相关成纤维细胞(CAFs)与肿瘤患者的耐药性和预后有关。本研究旨在探讨CAF合并肺腺癌(LUAD)患者预后与药物治疗反应的关系。与LUAD患者相关的数据来自The Cancer Genome Atlas-LUAD和GSE68465数据集。四种不同的算法用于量化CAF浸润和基质评分。加权基因网络共表达分析用于鉴定ca相关模块和枢纽基因。采用单因素Cox回归分析、最小绝对收缩和选择算子回归分析以及多因素Cox回归分析构建CAF特征,并通过个体CAF评分验证其预测预后的能力。构建8个基因的CAF相关特征,并计算CAF评分。CAF评分高的LUAD患者预后明显差于CAF评分低的患者。CAF评分是LUAD预后的独立危险因素。CAF评分高的患者对一些化疗药物敏感,在大多数情况下,他们对免疫治疗无反应。8基因CAF标记可以预测LUAD患者的预后,评估对化疗和免疫治疗的临床反应,从而为患者提供个性化治疗。
Transcriptome-based insights into the role of cancer-associated fibroblasts in lung adenocarcinoma prognosis and therapy.
Cancer-associated fibroblasts (CAFs) are related to drug resistance and prognosis of tumor patients. This study aimed to investigate the relationship between prognosis and drug treatment response in patients with CAF and lung adenocarcinoma (LUAD). The data pertaining to LUAD patients were obtained from The Cancer Genome Atlas-LUAD and GSE68465 datasets. Four different algorithms were used to quantify CAF infiltration and stromal scores. Weighted gene network co-expression analysis was used to identify CAF-related modules and hub genes. Univariate Cox regression analysis, least absolute shrinkage and selection operator regression analysis, and multivariate Cox regression analysis were used to construct CAF signatures, whose ability to predict prognosis was verified by individual CAF scores. The CAF-related signature of eight genes was constructed, and the CAF score was calculated. The prognosis of LUAD patients with high CAF scores was significantly worse than that of patients with low CAF scores. CAF score was an independent risk factor for LUAD prognosis. Patients with high CAF scores were sensitive to some chemotherapy drugs, and in most cases, they were non-responsive to immunotherapy. Eight-gene CAF signature may predict LUAD patient prognosis and evaluate clinical responses to chemotherapy and immunotherapy, enabling individualized treatment for the patients.
期刊介绍:
The primary aims of Computer Methods in Biomechanics and Biomedical Engineering are to provide a means of communicating the advances being made in the areas of biomechanics and biomedical engineering and to stimulate interest in the continually emerging computer based technologies which are being applied in these multidisciplinary subjects. Computer Methods in Biomechanics and Biomedical Engineering will also provide a focus for the importance of integrating the disciplines of engineering with medical technology and clinical expertise. Such integration will have a major impact on health care in the future.