你的血液即将交付:考虑运输时间和温度对稳定全血RNA降解的影响

IF 6.7 1区 化学 Q1 CHEMISTRY, ANALYTICAL
Filip Stefanovic, Lauren G. Brown, James MacDonald, Theo Bammler, Darawan Rinchai, Serena Nguyen, Yuting Zeng, Victoria Shinkawa, Karen Adams, Damien Chaussabel, Erwin Berthier, Amanda J. Haack* and Ashleigh B. Theberge*, 
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引用次数: 0

摘要

远程研究是接触那些无法进入大型医疗中心或大学的人群的宝贵工具。为了扩展远程研究工具包,我们之前开发了homeRNA,它允许在家自我收集和稳定血液,并证明了在高温气候下使用homeRNA的可行性。在这里,我们通过实验室和现场实验,通过系统研究探索高温对RNA完整性(表示为RNA完整性数,RIN)的影响,扩展了这项工作。与冷冻对照(总体平均RIN为8.2,n = 8)相比,在37°C下保存2、4和8天的样品的平均RIN分别为7.6、5.9和5.2 (n = 3),这表明典型的运输条件(~ 2天)产生适合下游RNA测序的样品。与冷冻对照(平均RIN为7.8,n = 3)相比,较短的时间间隔(6小时)即使在较高的温度(50°C)下也导致最小的RNA降解(中位数RIN为6.4,n = 3)。此外,我们在夏季使用连续温度探头(中位数RIN为7.1,n = 42)将单个供者的homrna稳定的血液运送到14个州并返回。来自所有地点的样品用3 ' mRNA-seq进行分析,以评估基因计数的差异,数据表明,由于不同的运输时间、温度和地区,转录本没有优先降解。总的来说,我们的数据支持homeRNA可以在高温条件下使用,为远程医疗、全球健康和临床研究提供分散的样本收集。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Your Blood is Out for Delivery: Considerations of Shipping Time and Temperature on Degradation of RNA from Stabilized Whole Blood

Your Blood is Out for Delivery: Considerations of Shipping Time and Temperature on Degradation of RNA from Stabilized Whole Blood

Remote research studies are an invaluable tool for reaching populations with limited access to large medical centers or universities. To expand the remote study toolkit, we previously developed homeRNA, which allows for at-home self-collection and stabilization of blood and demonstrated the feasibility of using homeRNA in high temperature climates. Here, we expand upon this work through a systematic study exploring the effects of high temperature on RNA integrity (represented as RNA Integrity Number, RIN) through in-lab and field experiments. Compared to the frozen controls (overall mean RIN of 8.2, n = 8), samples kept at 37 °C for 2, 4, and 8 days had mean RINs of 7.6, 5.9, and 5.2 (n = 3), respectively, indicating that typical shipping conditions (∼2 days) yield samples suitable for downstream RNA sequencing. Shorter time intervals (6 h) resulted in minimal RNA degradation (median RIN of 6.4, n = 3) even at higher temperatures (50 °C) compared to the frozen control (mean RIN of 7.8, n = 3). Additionally, we shipped homeRNA-stabilized blood from a single donor to 14 states and back during the summer with continuous temperature probes (7.1 median RIN, n = 42). Samples from all locations were analyzed with 3′ mRNA-seq to assess differences in gene counts, with the data suggesting that there was no preferential degradation of transcripts as a result of different shipping times, temperatures, and regions. Overall, our data support that homeRNA can be used in elevated temperature conditions, enabling decentralized sample collection for telemedicine, global health, and clinical research.

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来源期刊
Analytical Chemistry
Analytical Chemistry 化学-分析化学
CiteScore
12.10
自引率
12.20%
发文量
1949
审稿时长
1.4 months
期刊介绍: Analytical Chemistry, a peer-reviewed research journal, focuses on disseminating new and original knowledge across all branches of analytical chemistry. Fundamental articles may explore general principles of chemical measurement science and need not directly address existing or potential analytical methodology. They can be entirely theoretical or report experimental results. Contributions may cover various phases of analytical operations, including sampling, bioanalysis, electrochemistry, mass spectrometry, microscale and nanoscale systems, environmental analysis, separations, spectroscopy, chemical reactions and selectivity, instrumentation, imaging, surface analysis, and data processing. Papers discussing known analytical methods should present a significant, original application of the method, a notable improvement, or results on an important analyte.
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