暗箱东方鲀黄嘌呤氧化酶抑制肽的鉴定:肽组学分析、分子对接和动力学模拟

IF 9.8 1区 农林科学 Q1 CHEMISTRY, APPLIED
Bingkun Yang , Zhaopeng Zhong , Chunqing Zhang , Yuxin Jiang , Zehan Zhao , Xiaofei Wang , Yiyuan Li , Hao Zheng
{"title":"暗箱东方鲀黄嘌呤氧化酶抑制肽的鉴定:肽组学分析、分子对接和动力学模拟","authors":"Bingkun Yang ,&nbsp;Zhaopeng Zhong ,&nbsp;Chunqing Zhang ,&nbsp;Yuxin Jiang ,&nbsp;Zehan Zhao ,&nbsp;Xiaofei Wang ,&nbsp;Yiyuan Li ,&nbsp;Hao Zheng","doi":"10.1016/j.foodchem.2025.142935","DOIUrl":null,"url":null,"abstract":"<div><div>Hyperuricemia, caused by abnormal purine metabolism, is commonly treated with xanthine oxidase (XOD) inhibitors, uricosuric, and dietary adjustments. Recently, marine-derived bioactive peptides have gained attention as potential functional food ingredients due to their therapeutic potential. <em>Takifugu obscurus</em>, an economically significant offshore fish rich in crude proteins was explored in this study as a source of XOD inhibitory peptides. Enzyme hydrolysis combined with computer simulation identified TOH-A &gt; 1 kDa and TOH-<em>P</em> &gt; 1 kDa hydrolysates with high XOD inhibition rates, which were further selected for peptidomics characterization. After screening, seven peptides were synthesized, four of which (W11, DD7, WY7, and GA9) had inhibitory activity, with W11 showing the lowest IC<sub>50</sub>. The combination of molecular docking positions with molecular dynamics simulations explains that W11, DD7, and WY7 have the potential to be used to alleviate hyperuricemia. This study provides new insights into the structural mechanism and screening strategy of novel bioactive peptides in the future.</div></div>","PeriodicalId":318,"journal":{"name":"Food Chemistry","volume":"472 ","pages":"Article 142935"},"PeriodicalIF":9.8000,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Identification of novel xanthine oxidase inhibitory peptides from Takifugu obscurus: Peptidomic analysis, molecular docking, and dynamics simulation\",\"authors\":\"Bingkun Yang ,&nbsp;Zhaopeng Zhong ,&nbsp;Chunqing Zhang ,&nbsp;Yuxin Jiang ,&nbsp;Zehan Zhao ,&nbsp;Xiaofei Wang ,&nbsp;Yiyuan Li ,&nbsp;Hao Zheng\",\"doi\":\"10.1016/j.foodchem.2025.142935\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Hyperuricemia, caused by abnormal purine metabolism, is commonly treated with xanthine oxidase (XOD) inhibitors, uricosuric, and dietary adjustments. Recently, marine-derived bioactive peptides have gained attention as potential functional food ingredients due to their therapeutic potential. <em>Takifugu obscurus</em>, an economically significant offshore fish rich in crude proteins was explored in this study as a source of XOD inhibitory peptides. Enzyme hydrolysis combined with computer simulation identified TOH-A &gt; 1 kDa and TOH-<em>P</em> &gt; 1 kDa hydrolysates with high XOD inhibition rates, which were further selected for peptidomics characterization. After screening, seven peptides were synthesized, four of which (W11, DD7, WY7, and GA9) had inhibitory activity, with W11 showing the lowest IC<sub>50</sub>. The combination of molecular docking positions with molecular dynamics simulations explains that W11, DD7, and WY7 have the potential to be used to alleviate hyperuricemia. This study provides new insights into the structural mechanism and screening strategy of novel bioactive peptides in the future.</div></div>\",\"PeriodicalId\":318,\"journal\":{\"name\":\"Food Chemistry\",\"volume\":\"472 \",\"pages\":\"Article 142935\"},\"PeriodicalIF\":9.8000,\"publicationDate\":\"2025-01-16\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Food Chemistry\",\"FirstCategoryId\":\"97\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0308814625001852\",\"RegionNum\":1,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, APPLIED\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Food Chemistry","FirstCategoryId":"97","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0308814625001852","RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, APPLIED","Score":null,"Total":0}
引用次数: 0

摘要

由嘌呤代谢异常引起的高尿酸血症,通常用黄嘌呤氧化酶(XOD)抑制剂、降糖药和饮食调整来治疗。近年来,海洋生物活性肽作为一种潜在的功能性食品原料,因其潜在的治疗潜力而备受关注。本研究探索了一种富含粗蛋白质的具有重要经济意义的近海鱼类——暗鲷作为XOD抑制肽的来源。酶解结合计算机模拟鉴定出TOH-A >; 1 kDa和TOH-P >; 1 kDa水解产物具有较高的XOD抑制率,并进一步选择进行肽组学表征。经筛选,共合成7个多肽,其中W11、DD7、WY7、GA9 4个多肽具有抑制活性,其中W11的IC50最低。分子对接位置与分子动力学模拟的结合解释了W11、DD7和WY7具有用于缓解高尿酸血症的潜力。该研究为今后研究新型生物活性肽的结构机制和筛选策略提供了新的思路。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Identification of novel xanthine oxidase inhibitory peptides from Takifugu obscurus: Peptidomic analysis, molecular docking, and dynamics simulation

Identification of novel xanthine oxidase inhibitory peptides from Takifugu obscurus: Peptidomic analysis, molecular docking, and dynamics simulation

Identification of novel xanthine oxidase inhibitory peptides from Takifugu obscurus: Peptidomic analysis, molecular docking, and dynamics simulation
Hyperuricemia, caused by abnormal purine metabolism, is commonly treated with xanthine oxidase (XOD) inhibitors, uricosuric, and dietary adjustments. Recently, marine-derived bioactive peptides have gained attention as potential functional food ingredients due to their therapeutic potential. Takifugu obscurus, an economically significant offshore fish rich in crude proteins was explored in this study as a source of XOD inhibitory peptides. Enzyme hydrolysis combined with computer simulation identified TOH-A > 1 kDa and TOH-P > 1 kDa hydrolysates with high XOD inhibition rates, which were further selected for peptidomics characterization. After screening, seven peptides were synthesized, four of which (W11, DD7, WY7, and GA9) had inhibitory activity, with W11 showing the lowest IC50. The combination of molecular docking positions with molecular dynamics simulations explains that W11, DD7, and WY7 have the potential to be used to alleviate hyperuricemia. This study provides new insights into the structural mechanism and screening strategy of novel bioactive peptides in the future.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Food Chemistry
Food Chemistry 工程技术-食品科技
CiteScore
16.30
自引率
10.20%
发文量
3130
审稿时长
122 days
期刊介绍: Food Chemistry publishes original research papers dealing with the advancement of the chemistry and biochemistry of foods or the analytical methods/ approach used. All papers should focus on the novelty of the research carried out.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信