hvEEGNet:一种用于高保真脑电图重建的新型深度学习模型。

IF 2.5 4区 医学 Q2 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Frontiers in Neuroinformatics Pub Date : 2024-12-20 eCollection Date: 2024-01-01 DOI:10.3389/fninf.2024.1459970
Giulia Cisotto, Alberto Zancanaro, Italo F Zoppis, Sara L Manzoni
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引用次数: 0

摘要

多通道脑电图(EEG)时间序列建模是一项具有挑战性的任务,即使对于最新的深度学习方法也是如此。特别是,在这项工作中,我们的目标是努力实现这类数据的高保真重建,因为这对于分类、异常检测、自动标记和脑机接口等几个应用至关重要。方法:对近年来的研究成果进行了分析,发现脑电图信号的复杂动态和受试者间的大变异性对高保真重建提出了严峻的挑战。到目前为止,以前的工作在单通道信号的高保真重建和多通道数据集的低质量重建中都提供了很好的结果。因此,在本文中,我们提出了一种新的深度学习模型,称为hvEEGNet,它被设计为分层变分自编码器,并使用新的损失函数进行训练。我们在基准数据集2a(包括来自9个受试者的22通道EEG数据)上进行了测试。结果:我们表明,该方法能够高保真、快速(几十个epoch)地重建所有脑电信号通道,并且在不同受试者之间具有高一致性。我们还研究了重建保真度与训练持续时间之间的关系,并使用hvEEGNet作为异常检测器,我们发现了基准数据集中一些损坏且从未突出显示的数据。讨论:因此,hvEEGNet在一些需要对大型脑电图数据集进行自动标记且耗时的应用中可能非常有用。同时,这项工作提出了新的基础研究问题,即:(1)深度学习模型训练的有效性(针对脑电图数据)和(2)输入脑电图数据的系统表征以确保鲁棒性建模的必要性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
hvEEGNet: a novel deep learning model for high-fidelity EEG reconstruction.

Introduction: Modeling multi-channel electroencephalographic (EEG) time-series is a challenging tasks, even for the most recent deep learning approaches. Particularly, in this work, we targeted our efforts to the high-fidelity reconstruction of this type of data, as this is of key relevance for several applications such as classification, anomaly detection, automatic labeling, and brain-computer interfaces.

Methods: We analyzed the most recent works finding that high-fidelity reconstruction is seriously challenged by the complex dynamics of the EEG signals and the large inter-subject variability. So far, previous works provided good results in either high-fidelity reconstruction of single-channel signals, or poor-quality reconstruction of multi-channel datasets. Therefore, in this paper, we present a novel deep learning model, called hvEEGNet, designed as a hierarchical variational autoencoder and trained with a new loss function. We tested it on the benchmark Dataset 2a (including 22-channel EEG data from 9 subjects).

Results: We show that it is able to reconstruct all EEG channels with high-fidelity, fastly (in a few tens of epochs), and with high consistency across different subjects. We also investigated the relationship between reconstruction fidelity and the training duration and, using hvEEGNet as an anomaly detector, we spotted some data in the benchmark dataset that are corrupted and never highlighted before.

Discussion: Thus, hvEEGNet could be very useful in several applications where automatic labeling of large EEG dataset is needed and time-consuming. At the same time, this work opens new fundamental research questions about (1) the effectiveness of deep learning models training (for EEG data) and (2) the need for a systematic characterization of the input EEG data to ensure robust modeling.

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来源期刊
Frontiers in Neuroinformatics
Frontiers in Neuroinformatics MATHEMATICAL & COMPUTATIONAL BIOLOGY-NEUROSCIENCES
CiteScore
4.80
自引率
5.70%
发文量
132
审稿时长
14 weeks
期刊介绍: Frontiers in Neuroinformatics publishes rigorously peer-reviewed research on the development and implementation of numerical/computational models and analytical tools used to share, integrate and analyze experimental data and advance theories of the nervous system functions. Specialty Chief Editors Jan G. Bjaalie at the University of Oslo and Sean L. Hill at the École Polytechnique Fédérale de Lausanne are supported by an outstanding Editorial Board of international experts. This multidisciplinary open-access journal is at the forefront of disseminating and communicating scientific knowledge and impactful discoveries to researchers, academics and the public worldwide. Neuroscience is being propelled into the information age as the volume of information explodes, demanding organization and synthesis. Novel synthesis approaches are opening up a new dimension for the exploration of the components of brain elements and systems and the vast number of variables that underlie their functions. Neural data is highly heterogeneous with complex inter-relations across multiple levels, driving the need for innovative organizing and synthesizing approaches from genes to cognition, and covering a range of species and disease states. Frontiers in Neuroinformatics therefore welcomes submissions on existing neuroscience databases, development of data and knowledge bases for all levels of neuroscience, applications and technologies that can facilitate data sharing (interoperability, formats, terminologies, and ontologies), and novel tools for data acquisition, analyses, visualization, and dissemination of nervous system data. Our journal welcomes submissions on new tools (software and hardware) that support brain modeling, and the merging of neuroscience databases with brain models used for simulation and visualization.
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