鉴定嗜铁相关lncrna作为改善胶质母细胞瘤免疫治疗的潜在靶点。

IF 1.7 4区 医学 Q3 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
Zhaochen Wang, Xiao Jin, Xiaoli Yong
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引用次数: 0

摘要

与铁突变相关的长非编码RNA(lncRNA)在预测胶质母细胞瘤(GBM)免疫治疗反应方面的作用仍不明确。本研究建立了一个11-lncRNAs预后特征。研究采用了差异基因表达分析、单变量和多变量Cox回归分析以及最小绝对缩减和选择算子(LASSO)回归算法来识别预后铁蛋白相关基因,并建立了风险评分的提名图模型。在TCGA-GBM队列中,采用Kaplan-Meier生存图和接收者操作特征(ROC)曲线分析来评估模型的预后准确性。为了验证这些特征的表达,我们分析了三个lncRNA(AGAP2-AS1、OSMR-AS1和UNC5B-AS1)在LN229和U87细胞中的表达水平。ROC分析表明,该特征的曲线下面积(AUC)为0.814,表明它在GBM预后预测中具有良好的表现。Kaplan-Meier分析表明,高危组GBM患者的生存率明显低于低危组,该特征在GBM预后预测方面的表现优于传统的临床病理因素。进一步的qRT-PCR实验也证实了我们对lncRNA特征的预测。这些与铁突变相关的lncRNA可能是胶质母细胞瘤的治疗靶点,靶向这些lncRNA还能提高免疫疗法的疗效,尤其是免疫检查点抑制剂。从机理上讲,这些发现可能归因于N6-甲基腺苷(m6A)mRNA对lncRNA的修饰。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Identification of ferroptosis-related LncRNAs as potential targets for improving immunotherapy in glioblastoma.

The effect of ferroptosis-related long non-coding RNAs (lncRNAs) in predicting immunotherapy response to glioblastoma (GBM) remains obscure. This study established a 11-lncRNAs prognostic signature. Differential gene expression analysis, univariate and multivariate Cox regression analyses and the least absolute shrinkage and selection operator (LASSO) regression algorithm were used to identify prognostic ferroptosis-related genes and establish a nomogram model of risk score. Kaplan-Meier survival plots and receiver operating characteristic (ROC) curve analysis were used to evaluate the prognostic accuracy of the model in the TCGA-GBM cohort. To verify the expression of these signatures, we analyzed the expression levels of three lncRNAs (AGAP2-AS1, OSMR-AS1, UNC5B-AS1) in LN229 and U87 cells. The ROC analysis showed that the area under curve (AUC) of this signature is 0.814, suggesting that it has a promising performance on GBM prognostic prediction. Kaplan-Meier analysis showed that the survival rate of GBM patients in high-risk group was significantly lower than low-risk group, and the performance of this signature on GBM prognostic prediction was superior to conventional clinicopathological factors. Further qRT-PCR experiment also confirmed our prediction of lncRNA signatures. These ferroptosis-related lncRNAs might be therapeutic targets for glioblastoma, and targeting these lncRNAs can also improve the efficacy of immunotherapy, especially immune checkpoint inhibitors. Mechanistically, these findings might attribute to N6-methyladenosine (m6A) mRNA modification on lncRNAs.

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来源期刊
CiteScore
4.10
自引率
6.20%
发文量
179
审稿时长
4-8 weeks
期刊介绍: The primary aims of Computer Methods in Biomechanics and Biomedical Engineering are to provide a means of communicating the advances being made in the areas of biomechanics and biomedical engineering and to stimulate interest in the continually emerging computer based technologies which are being applied in these multidisciplinary subjects. Computer Methods in Biomechanics and Biomedical Engineering will also provide a focus for the importance of integrating the disciplines of engineering with medical technology and clinical expertise. Such integration will have a major impact on health care in the future.
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