利用稀疏数据进行快速高光谱光热中红外光谱成像,用于妇科癌症组织亚型分析

IF 6.7 1区 化学 Q1 CHEMISTRY, ANALYTICAL
Reza Reihanisaransari, Chalapathi Charan Gajjela, Xinyu Wu, Ragib Ishrak, Sara Corvigno, Yanping Zhong, Jinsong Liu, Anil K. Sood, David Mayerich, Sebastian Berisha and Rohith Reddy*, 
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引用次数: 0

摘要

卵巢癌的检测历来依赖于由经验丰富的病理学家进行活检、组织染色和形态学分析等多步骤过程。这种传统方法虽然应用广泛,但也存在一些缺点:定性、耗时且严重依赖染色质量。中红外(MIR)高光谱光热成像技术是一种无标记的生化定量技术,与机器学习算法相结合,可省去染色过程,并提供与传统组织学相媲美的定量结果。然而,这项技术的速度较慢。这项工作提出了一种新的近红外光热成像方法,将其速度提高了一个数量级。这种方法解决了成像分辨率和数据采集速度之间长期存在的权衡问题,能够从采样不足的数据集重建高质量、高分辨率的图像,并将数据采集时间缩短了 10 倍。我们采用随机森林和卷积神经网络 (CNN) 模型以及接收者工作特征曲线 (ROC) 等多种定量指标评估了稀疏成像方法的性能,包括均方误差 (MSE)、结构相似性指数 (SSIM) 和组织亚型分类准确率。我们基于 100 个卵巢癌患者样本和 6500 多万个数据点的数据进行了稳健的统计分析,结果表明该方法能够生成质量上乘的图像,并准确区分不同的妇科组织类型,分割准确率超过 95%。我们的工作证明了将快速中红外高光谱光热成像与机器学习相结合以增强卵巢癌组织特征描述的可行性,为定量、无标记、自动化组织病理学铺平了道路。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Rapid Hyperspectral Photothermal Mid-Infrared Spectroscopic Imaging from Sparse Data for Gynecologic Cancer Tissue Subtyping

Rapid Hyperspectral Photothermal Mid-Infrared Spectroscopic Imaging from Sparse Data for Gynecologic Cancer Tissue Subtyping

Ovarian cancer detection has traditionally relied on a multistep process that includes biopsy, tissue staining, and morphological analysis by experienced pathologists. While widely practiced, this conventional approach suffers from several drawbacks: it is qualitative, time-intensive, and heavily dependent on the quality of staining. Mid-infrared (MIR) hyperspectral photothermal imaging is a label-free, biochemically quantitative technology that, when combined with machine learning algorithms, can eliminate the need for staining and provide quantitative results comparable to traditional histology. However, this technology is slow. This work presents a novel approach to MIR photothermal imaging that enhances its speed by an order of magnitude. This method resolves the longstanding trade-off between imaging resolution and data collection speed, enabling the reconstruction of high-quality, high-resolution images from undersampled data sets and achieving a 10X improvement in data acquisition time. We assessed the performance of our sparse imaging methodology using a variety of quantitative metrics, including mean squared error (MSE), structural similarity index (SSIM), and tissue subtype classification accuracies, employing both random forest and convolutional neural network (CNN) models, accompanied by Receiver Operating Characteristic (ROC) curves. Our statistically robust analysis, based on data from 100 ovarian cancer patient samples and over 65 million data points, demonstrates the method’s capability to produce superior image quality and accurately distinguish between different gynecological tissue types with segmentation accuracy exceeding 95%. Our work demonstrates the feasibility of integrating rapid MIR hyperspectral photothermal imaging with machine learning in enhancing ovarian cancer tissue characterization, paving the way for quantitative, label-free, automated histopathology.

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来源期刊
Analytical Chemistry
Analytical Chemistry 化学-分析化学
CiteScore
12.10
自引率
12.20%
发文量
1949
审稿时长
1.4 months
期刊介绍: Analytical Chemistry, a peer-reviewed research journal, focuses on disseminating new and original knowledge across all branches of analytical chemistry. Fundamental articles may explore general principles of chemical measurement science and need not directly address existing or potential analytical methodology. They can be entirely theoretical or report experimental results. Contributions may cover various phases of analytical operations, including sampling, bioanalysis, electrochemistry, mass spectrometry, microscale and nanoscale systems, environmental analysis, separations, spectroscopy, chemical reactions and selectivity, instrumentation, imaging, surface analysis, and data processing. Papers discussing known analytical methods should present a significant, original application of the method, a notable improvement, or results on an important analyte.
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