基因组和表型分析揭示柠檬白念珠菌 SH12 在植物发酵过程中的碳水化合物代谢特征

IF 4.8 1区 农林科学 Q1 FOOD SCIENCE & TECHNOLOGY
Yiqiang Dai, Zhe Wang, Daoying Wang, Xi Yao, Mingsheng Dong, Jing Yang, Xiudong Xia
{"title":"基因组和表型分析揭示柠檬白念珠菌 SH12 在植物发酵过程中的碳水化合物代谢特征","authors":"Yiqiang Dai, Zhe Wang, Daoying Wang, Xi Yao, Mingsheng Dong, Jing Yang, Xiudong Xia","doi":"10.1016/j.fbio.2024.104998","DOIUrl":null,"url":null,"abstract":"has been widely utilized for industrial fermentation. Previously, we found SH12 as a starter culture, exhibited superior fermentation characteristics in plant-based food, but its genomic, evolutionary and carbohydrate metabolic features remained unclear. This study aimed to reveal the metabolic characteristics of SH12 in response to various carbon sources by genomic and phenotypic analysis. By multiple sequencing technology, we assembled the 1.84 Mb complete genome of SH12 and identified 193 carbohydrate metabolism genes involved in the KEGG annotation, including 59 carbohydrate-active enzymes (CAZymes) genes. Comparative genome analysis indicated that SH12 had carbohydrate metabolism pathways similar to other , but it had 27 specific genes annotated as ABC transporters and hypothetical proteins, probably representing great resilience to the environment. The reconstruction of carbohydrate metabolic pathways and carbon utilization tests showed that SH12 could metabolize glucose, sucrose, fructose and maltose well, followed by xylose, arabinose, mannose and cellobiose, but could not utilize galactose, lactose, raffinose and stachyose. Soymilk fermentation test indicated that the strain could produce mannitol, and water-soluble and water-insoluble α-glucans. This study provided insights into a deeper understanding of the genomic and carbohydrate metabolic characteristics of SH12, and implied its potential application in plant-based fermented food.","PeriodicalId":12409,"journal":{"name":"Food Bioscience","volume":null,"pages":null},"PeriodicalIF":4.8000,"publicationDate":"2024-08-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Genomic and phenotypic analysis unveiling the carbohydrate metabolic characteristics of Leuconostoc citreum SH12 in plant-based fermentation\",\"authors\":\"Yiqiang Dai, Zhe Wang, Daoying Wang, Xi Yao, Mingsheng Dong, Jing Yang, Xiudong Xia\",\"doi\":\"10.1016/j.fbio.2024.104998\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"has been widely utilized for industrial fermentation. Previously, we found SH12 as a starter culture, exhibited superior fermentation characteristics in plant-based food, but its genomic, evolutionary and carbohydrate metabolic features remained unclear. This study aimed to reveal the metabolic characteristics of SH12 in response to various carbon sources by genomic and phenotypic analysis. By multiple sequencing technology, we assembled the 1.84 Mb complete genome of SH12 and identified 193 carbohydrate metabolism genes involved in the KEGG annotation, including 59 carbohydrate-active enzymes (CAZymes) genes. Comparative genome analysis indicated that SH12 had carbohydrate metabolism pathways similar to other , but it had 27 specific genes annotated as ABC transporters and hypothetical proteins, probably representing great resilience to the environment. The reconstruction of carbohydrate metabolic pathways and carbon utilization tests showed that SH12 could metabolize glucose, sucrose, fructose and maltose well, followed by xylose, arabinose, mannose and cellobiose, but could not utilize galactose, lactose, raffinose and stachyose. Soymilk fermentation test indicated that the strain could produce mannitol, and water-soluble and water-insoluble α-glucans. This study provided insights into a deeper understanding of the genomic and carbohydrate metabolic characteristics of SH12, and implied its potential application in plant-based fermented food.\",\"PeriodicalId\":12409,\"journal\":{\"name\":\"Food Bioscience\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.8000,\"publicationDate\":\"2024-08-26\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Food Bioscience\",\"FirstCategoryId\":\"97\",\"ListUrlMain\":\"https://doi.org/10.1016/j.fbio.2024.104998\",\"RegionNum\":1,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"FOOD SCIENCE & TECHNOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Food Bioscience","FirstCategoryId":"97","ListUrlMain":"https://doi.org/10.1016/j.fbio.2024.104998","RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"FOOD SCIENCE & TECHNOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

已被广泛用于工业发酵。此前,我们发现 SH12 作为起始培养物,在植物性食品中表现出卓越的发酵特性,但其基因组、进化和碳水化合物代谢特征仍不清楚。本研究旨在通过基因组和表型分析,揭示 SH12 对各种碳源的代谢特征。通过多重测序技术,我们组装了SH12的1.84 Mb完整基因组,并在KEGG注释中鉴定出193个碳水化合物代谢基因,其中包括59个碳水化合物活性酶(CAZymes)基因。比较基因组分析表明,SH12的碳水化合物代谢途径与其他Ⅴ类生物相似,但它有27个特定基因被注释为ABC转运体和假定蛋白,这可能代表了它对环境的强大适应能力。碳水化合物代谢途径的重建和碳利用试验表明,SH12 能很好地代谢葡萄糖、蔗糖、果糖和麦芽糖,其次是木糖、阿拉伯糖、甘露糖和纤维生物糖,但不能利用半乳糖、乳糖、棉子糖和水苏糖。豆浆发酵试验表明,该菌株能产生甘露醇、水溶性和水不溶性α-葡聚糖。这项研究有助于深入了解 SH12 的基因组和碳水化合物代谢特征,并暗示其在植物性发酵食品中的潜在应用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Genomic and phenotypic analysis unveiling the carbohydrate metabolic characteristics of Leuconostoc citreum SH12 in plant-based fermentation
has been widely utilized for industrial fermentation. Previously, we found SH12 as a starter culture, exhibited superior fermentation characteristics in plant-based food, but its genomic, evolutionary and carbohydrate metabolic features remained unclear. This study aimed to reveal the metabolic characteristics of SH12 in response to various carbon sources by genomic and phenotypic analysis. By multiple sequencing technology, we assembled the 1.84 Mb complete genome of SH12 and identified 193 carbohydrate metabolism genes involved in the KEGG annotation, including 59 carbohydrate-active enzymes (CAZymes) genes. Comparative genome analysis indicated that SH12 had carbohydrate metabolism pathways similar to other , but it had 27 specific genes annotated as ABC transporters and hypothetical proteins, probably representing great resilience to the environment. The reconstruction of carbohydrate metabolic pathways and carbon utilization tests showed that SH12 could metabolize glucose, sucrose, fructose and maltose well, followed by xylose, arabinose, mannose and cellobiose, but could not utilize galactose, lactose, raffinose and stachyose. Soymilk fermentation test indicated that the strain could produce mannitol, and water-soluble and water-insoluble α-glucans. This study provided insights into a deeper understanding of the genomic and carbohydrate metabolic characteristics of SH12, and implied its potential application in plant-based fermented food.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Food Bioscience
Food Bioscience Biochemistry, Genetics and Molecular Biology-Biochemistry
CiteScore
6.40
自引率
5.80%
发文量
671
审稿时长
27 days
期刊介绍: Food Bioscience is a peer-reviewed journal that aims to provide a forum for recent developments in the field of bio-related food research. The journal focuses on both fundamental and applied research worldwide, with special attention to ethnic and cultural aspects of food bioresearch.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信