使用 PiRATeMC 对操作室中的 60 只动物进行高质量、高通量和低成本的同步视频记录。

IF 2.7 4区 医学 Q2 BIOCHEMICAL RESEARCH METHODS
Jarryd Ramborger , Sumay Kalra , Joseph Mosquera , Alexander C.W. Smith , Olivier George
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引用次数: 0

摘要

背景:基于树莓派(Raspberry Pi)的录制设备在药物自我给药研究的视频分析方面的发展前景广阔,因为它经济实惠、可定制,并且能够提取深入的行为模式。然而,大多数视频记录系统仅限于几个摄像头,因此无法进行大规模研究:新方法:我们扩展了 PiRATeMC(基于 Pi 的运动捕捉远程采集技术)录制系统,扩大了其规模,修改了其代码,并增加了设备以适应大规模视频采集,同时提供了有关吞吐能力、视频保真度、设备同步性的数据,并对 Raspberry Pi 3B+ 和 4B 型号进行了比较:使用 PiRATeMC 默认录制参数可实现最小存储量(约 350MB/h)、高吞吐量(< ~120秒/Pi)、高视频保真度以及约 0.02 秒内的同步性,从而能够以商业成本的一小部分同时录制 60 只动物在单个自我给药室中的不同会话长度。与现有方法相比,Raspberry Pi 型号之间没有明显差异:与其他视频记录系统相比,该系统能够以更少的存储需求和更低的成本同时获取更多的视频数据。此外,我们还报告了对吞吐量、保真度和同步性的深入量化评估,展示了系统的实时能力:本文介绍的系统只需一名技术人员在一个月内就能完全安装完毕,并提供了一个可扩展、低成本、有质量保证的程序,具有高度的定制性和记录设备之间的同步性,能够在各种物种和环境中记录大量受试者和高周转率的时间段。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
High quality, high throughput, and low-cost simultaneous video recording of 60 animals in operant chambers using PiRATeMC

Background

The development of Raspberry Pi-based recording devices for video analyses of drug self-administration studies has been shown to be promising in terms of affordability, customizability, and capacity to extract in-depth behavioral patterns. Yet, most video recording systems are limited to a few cameras making them incompatible with large-scale studies.

New method

We expanded the PiRATeMC (Pi-based Remote Acquisition Technology for Motion Capture) recording system by increasing its scale, modifying its code, and adding equipment to accommodate large-scale video acquisition, accompanied by data on throughput capabilities, video fidelity, synchronicity of devices, and comparisons between Raspberry Pi 3B+ and 4B models.

Results

Using PiRATeMC default recording parameters resulted in minimal storage (∼350MB/h), high throughput (< ∼120 seconds/Pi), high video fidelity, and synchronicity within ∼0.02 seconds, affording the ability to simultaneously record 60 animals in individual self-administration chambers for various session lengths at a fraction of commercial costs. No consequential differences were found between Raspberry Pi models.

Comparison with existing method(s)

This system allows greater acquisition of video data simultaneously than other video recording systems by an order of magnitude with less storage needs and lower costs. Additionally, we report in-depth quantitative assessments of throughput, fidelity, and synchronicity, displaying real-time system capabilities.

Conclusions

The system presented is able to be fully installed in a month’s time by a single technician and provides a scalable, low cost, and quality-assured procedure with a high-degree of customization and synchronicity between recording devices, capable of recording a large number of subjects and timeframes with high turnover in a variety of species and settings.

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来源期刊
Journal of Neuroscience Methods
Journal of Neuroscience Methods 医学-神经科学
CiteScore
7.10
自引率
3.30%
发文量
226
审稿时长
52 days
期刊介绍: The Journal of Neuroscience Methods publishes papers that describe new methods that are specifically for neuroscience research conducted in invertebrates, vertebrates or in man. Major methodological improvements or important refinements of established neuroscience methods are also considered for publication. The Journal''s Scope includes all aspects of contemporary neuroscience research, including anatomical, behavioural, biochemical, cellular, computational, molecular, invasive and non-invasive imaging, optogenetic, and physiological research investigations.
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