前沿|用于快速贝叶斯估计多受试者大脑激活模式的典型多面体张量基础

IF 2.5 4区 医学 Q2 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Michelle F. Miranda
{"title":"前沿|用于快速贝叶斯估计多受试者大脑激活模式的典型多面体张量基础","authors":"Michelle F. Miranda","doi":"10.3389/fninf.2024.1399391","DOIUrl":null,"url":null,"abstract":"Task-evoked functional magnetic resonance imaging studies, such as the Human Connectome Project (HCP), are a powerful tool for exploring how brain activity is influenced by cognitive tasks like memory retention, decision-making, and language processing. A fast Bayesian function-on-scalar model is proposed for estimating population-level activation maps linked to the working memory task. The model is based on the canonical polyadic (CP) tensor decomposition of coefficient maps obtained for each subject. This decomposition effectively yields a tensor basis capable of extracting both common features and subject-specific features from the coefficient maps. These subject-specific features, in turn, are modeled as a function of covariates of interest using a Bayesian model that accounts for the correlation of the CP-extracted features. The dimensionality reduction achieved with the tensor basis allows for a fast MCMC estimation of population-level activation maps. This model is applied to one hundred unrelated subjects from the HCP dataset, yielding significant insights into brain signatures associated with working memory.","PeriodicalId":12462,"journal":{"name":"Frontiers in Neuroinformatics","volume":"44 1","pages":""},"PeriodicalIF":2.5000,"publicationDate":"2024-07-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Frontiers | A canonical polyadic tensor basis for fast Bayesian estimation of multi-subject brain activation patterns\",\"authors\":\"Michelle F. Miranda\",\"doi\":\"10.3389/fninf.2024.1399391\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Task-evoked functional magnetic resonance imaging studies, such as the Human Connectome Project (HCP), are a powerful tool for exploring how brain activity is influenced by cognitive tasks like memory retention, decision-making, and language processing. A fast Bayesian function-on-scalar model is proposed for estimating population-level activation maps linked to the working memory task. The model is based on the canonical polyadic (CP) tensor decomposition of coefficient maps obtained for each subject. This decomposition effectively yields a tensor basis capable of extracting both common features and subject-specific features from the coefficient maps. These subject-specific features, in turn, are modeled as a function of covariates of interest using a Bayesian model that accounts for the correlation of the CP-extracted features. The dimensionality reduction achieved with the tensor basis allows for a fast MCMC estimation of population-level activation maps. This model is applied to one hundred unrelated subjects from the HCP dataset, yielding significant insights into brain signatures associated with working memory.\",\"PeriodicalId\":12462,\"journal\":{\"name\":\"Frontiers in Neuroinformatics\",\"volume\":\"44 1\",\"pages\":\"\"},\"PeriodicalIF\":2.5000,\"publicationDate\":\"2024-07-29\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Frontiers in Neuroinformatics\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.3389/fninf.2024.1399391\",\"RegionNum\":4,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MATHEMATICAL & COMPUTATIONAL BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Frontiers in Neuroinformatics","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.3389/fninf.2024.1399391","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATHEMATICAL & COMPUTATIONAL BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

任务诱发功能磁共振成像研究,如人类连接组计划(HCP),是探索大脑活动如何受记忆保持、决策和语言处理等认知任务影响的有力工具。本文提出了一种快速贝叶斯尺度函数模型,用于估算与工作记忆任务相关的群体水平激活图谱。该模型基于对每个受试者的系数图进行典型多面体(CP)张量分解。这种分解有效地产生了一个张量基础,能够从系数图中提取共性特征和特定受试者特征。这些特定受试者特征反过来又通过贝叶斯模型作为相关协变量的函数进行建模,该模型考虑了 CP 提取特征的相关性。利用张量基础实现的降维可以对群体级激活图进行快速的 MCMC 估算。该模型被应用于 HCP 数据集中的 100 名无关受试者,从而对与工作记忆相关的大脑特征有了重要的了解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Frontiers | A canonical polyadic tensor basis for fast Bayesian estimation of multi-subject brain activation patterns
Task-evoked functional magnetic resonance imaging studies, such as the Human Connectome Project (HCP), are a powerful tool for exploring how brain activity is influenced by cognitive tasks like memory retention, decision-making, and language processing. A fast Bayesian function-on-scalar model is proposed for estimating population-level activation maps linked to the working memory task. The model is based on the canonical polyadic (CP) tensor decomposition of coefficient maps obtained for each subject. This decomposition effectively yields a tensor basis capable of extracting both common features and subject-specific features from the coefficient maps. These subject-specific features, in turn, are modeled as a function of covariates of interest using a Bayesian model that accounts for the correlation of the CP-extracted features. The dimensionality reduction achieved with the tensor basis allows for a fast MCMC estimation of population-level activation maps. This model is applied to one hundred unrelated subjects from the HCP dataset, yielding significant insights into brain signatures associated with working memory.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Frontiers in Neuroinformatics
Frontiers in Neuroinformatics MATHEMATICAL & COMPUTATIONAL BIOLOGY-NEUROSCIENCES
CiteScore
4.80
自引率
5.70%
发文量
132
审稿时长
14 weeks
期刊介绍: Frontiers in Neuroinformatics publishes rigorously peer-reviewed research on the development and implementation of numerical/computational models and analytical tools used to share, integrate and analyze experimental data and advance theories of the nervous system functions. Specialty Chief Editors Jan G. Bjaalie at the University of Oslo and Sean L. Hill at the École Polytechnique Fédérale de Lausanne are supported by an outstanding Editorial Board of international experts. This multidisciplinary open-access journal is at the forefront of disseminating and communicating scientific knowledge and impactful discoveries to researchers, academics and the public worldwide. Neuroscience is being propelled into the information age as the volume of information explodes, demanding organization and synthesis. Novel synthesis approaches are opening up a new dimension for the exploration of the components of brain elements and systems and the vast number of variables that underlie their functions. Neural data is highly heterogeneous with complex inter-relations across multiple levels, driving the need for innovative organizing and synthesizing approaches from genes to cognition, and covering a range of species and disease states. Frontiers in Neuroinformatics therefore welcomes submissions on existing neuroscience databases, development of data and knowledge bases for all levels of neuroscience, applications and technologies that can facilitate data sharing (interoperability, formats, terminologies, and ontologies), and novel tools for data acquisition, analyses, visualization, and dissemination of nervous system data. Our journal welcomes submissions on new tools (software and hardware) that support brain modeling, and the merging of neuroscience databases with brain models used for simulation and visualization.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信