通过 XGBoost 回归发现山楂叶及其仿冒品杜仲叶中降血脂成分的可解释筛选方法

IF 3.1 2区 农林科学 Q2 CHEMISTRY, APPLIED
Plant Foods for Human Nutrition Pub Date : 2024-03-01 Epub Date: 2024-02-10 DOI:10.1007/s11130-024-01148-z
Zhen Li, Yuan Du, Chen Ding, Pufan Yang, Lin Wang, Yan Zhao
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引用次数: 0

摘要

有效成分组是反映植物性功能食品固有特征的一个突出特点。山楂叶(CHL)是一种茶叶替代品,具有抗高脂血症的内在营养特性,但由于商业标签相似,首先被发现掺入了杜仲叶(MDL)。在这种情况下,我们通过植物化学成分分析和活性评估对上述两种截然不同的物种进行了研究。CHL 对游离脂肪酸引发的 HepG2 细胞脂质沉积的改善效果明显优于 MDL。基于分子网络的代谢图谱在 CHL 和 MDL 中分别发现了 68 和 67 个成分,其中有 33 个共享成分。研究人员选择了性能卓越的极端梯度提升(XGBoost)算法来筛选有助于降脂活性的候选成分,随后用夏普利加法解释(SHAP)方法对输出结果进行解释。在 CHL 和 MDL 中,分别有 12 种和 8 种成分被筛选为高血脂抑制剂,只有 4 种成分是共有的。对所选成分及其组合的生物活性评估进一步证实了它们的抗高脂血症能力。这些发现强调了利用可解释的机器学习方法筛选生物活性相关化合物的可行性,并说明即使存在共享成分,相关物种也可能含有不同的降血脂成分。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
An Interpretable Screening Approach Derived Through XGBoost Regression for the Discovery of Hypolipidemic Contributors in Chinese Hawthorn Leaf and its Counterfeit Malus Doumeri Leaf.

The active ingredient group is a prominent feature reflecting the inherent characteristics of plant-based functional foods. Chinese hawthorn leaf (CHL), a tea substitute possessing intrinsic nutritional properties in anti-hyperlipidemia, was first found to be adulterated with Malus doumeri leaf (MDL) owing to similar commercial labels. In this context, the above-mentioned two contrasting species were explored through phytochemical profiling and activity assessment. The amelioration effect of CHL on free fatty acids-elicited lipid deposition in HepG2 cells was significantly better than that of MDL. Molecular networking-based metabolic profiles identified 68 and 67 components in CHL and MDL, with 33 shared components. Extreme gradient boosting (XGBoost) algorithm with outstanding performance was selected to screen candidate components contributing to hypolipidemic activity, and the output was later interpreted by Shapley additive explanations (SHAP) method. Twelve and eight components were separately screened as hyperlipidemic inhibitors in CHL and MDL, while only four constituents were shared. The bioactivity evaluation of selected ingredients and combinations further confirmed their anti-hyperlipidemia capacity. These findings emphasized the feasibility of filtering bioactivity-related compounds using interpretable machine learning approaches and illustrated that related species may contain different hypolipidemic contributors, even if shared constituents existed.

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来源期刊
Plant Foods for Human Nutrition
Plant Foods for Human Nutrition 工程技术-食品科技
CiteScore
6.80
自引率
7.50%
发文量
89
审稿时长
12-24 weeks
期刊介绍: Plant Foods for Human Nutrition (previously Qualitas Plantarum) is an international journal that publishes reports of original research and critical reviews concerned with the improvement and evaluation of the nutritional quality of plant foods for humans, as they are influenced by: - Biotechnology (all fields, including molecular biology and genetic engineering) - Food science and technology - Functional, nutraceutical or pharma foods - Other nutrients and non-nutrients inherent in plant foods
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