Structural optimization in TensErLEED using a parameter tree and R-factor gradients

IF 13.1 1区 材料科学 Q1 CHEMISTRY, PHYSICAL
Alexandra M. Imre,Paul Haidegger,Florian Kraushofer,Ralf Wanzenböck,Tobias Hable,Sarah Tobisch,Marie Kienzer,Florian Buchner,Jesús Carrete,Georg K. H. Madsen,Michael Schmid,Ulrike Diebold,Michele Riva
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引用次数: 0

Abstract

Abstract Quantitative low-energy electron diffraction [LEED I ( V )] is a powerful method for surface-structure determination, based on a direct comparison of I ( V ) data between experiment and computations for a structure model. As the diffraction intensities I are highly sensitive to subtle structural changes, local structure optimization is essential for assessing the validity of a structure model and finding the best-fit structure. Even when using the tensor-LEED approximation—which accelerates optimization by applying a perturbative treatment of small deviations from a reference structure—the optimization process is computationally expensive. In the new tensor-LEED implementation presented in this work, the problem of surface-structure optimization is reformulated using a tree-based data structure, which helps to avoid redundant function evaluations. Intensities are computed on the fly, eliminating limitations of previous algorithms using grid-based search with precomputed values. This enables the use of state-of-the-art optimization algorithms. Implemented in Python with the JAX library, the method provides access to gradients of the R factor and supports execution on graphics processing units (GPUs). These developments reduce the computing time by more than an order of magnitude.
使用参数树和r因子梯度的TensErLEED结构优化
定量低能电子衍射[LEED I (V)]是一种强大的表面结构测定方法,基于结构模型的实验和计算之间的I (V)数据的直接比较。由于衍射强度对细微的结构变化非常敏感,因此为了评估结构模型的有效性并找到最适合的结构,局部结构优化是必不可少的。即使使用张量leed近似(通过对参考结构的小偏差进行微扰处理来加速优化),优化过程在计算上也是昂贵的。在本工作中提出的新的张量leed实现中,使用基于树的数据结构重新制定了表面结构优化问题,这有助于避免冗余的函数评估。强度是动态计算的,消除了以前使用基于网格的搜索和预先计算值的算法的局限性。这使得使用最先进的优化算法成为可能。该方法使用JAX库在Python中实现,提供对R因子梯度的访问,并支持在图形处理单元(gpu)上执行。这些发展将计算时间减少了一个数量级以上。
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来源期刊
npj Computational Materials
npj Computational Materials Mathematics-Modeling and Simulation
CiteScore
15.30
自引率
5.20%
发文量
229
审稿时长
6 weeks
期刊介绍: npj Computational Materials is a high-quality open access journal from Nature Research that publishes research papers applying computational approaches for the design of new materials and enhancing our understanding of existing ones. The journal also welcomes papers on new computational techniques and the refinement of current approaches that support these aims, as well as experimental papers that complement computational findings. Some key features of npj Computational Materials include a 2-year impact factor of 12.241 (2021), article downloads of 1,138,590 (2021), and a fast turnaround time of 11 days from submission to the first editorial decision. The journal is indexed in various databases and services, including Chemical Abstracts Service (ACS), Astrophysics Data System (ADS), Current Contents/Physical, Chemical and Earth Sciences, Journal Citation Reports/Science Edition, SCOPUS, EI Compendex, INSPEC, Google Scholar, SCImago, DOAJ, CNKI, and Science Citation Index Expanded (SCIE), among others.
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