Kai Kamijo, Motoki Shiga, Shusuke Kanomi, Tomohiro Miyata, Hiroshi Jinnai
{"title":"Unsupervised machine learning for automated crystal orientation mapping on noisy 4D-STEM data","authors":"Kai Kamijo, Motoki Shiga, Shusuke Kanomi, Tomohiro Miyata, Hiroshi Jinnai","doi":"10.1038/s41524-026-02337-x","DOIUrl":null,"url":null,"abstract":"Four-dimensional scanning transmission electron microscopy (4D-STEM) is a high-throughput measurement used to comprehensively acquire diffraction patterns across a region of interest in a specimen. While the measurement is useful for identifying crystallographic microstructures, the data analysis requires significant effort owing to the complexity and high dimensionality of the data. Furthermore, the analysis of low signal-to-noise data from beam-sensitive materials such as polymers is particularly challenging. This study proposes an automatic analysis pipeline that leverages denoising and unsupervised crystallographic analysis for 4D-STEM data. The denoising method is based on a self-supervised approach that eliminates the need for clean training images. The developed method is extended to 4D-STEM data by utilizing diffraction patterns observed at neighboring probe positions. The subsequent unsupervised analysis is designed to be invariant to the crystal in-plane rotations, enabling the effective identification of crystal components. The efficacy of the proposed pipeline is evaluated using both synthetic and experimental 4D-STEM data. Quantitative evaluation for synthetic data across various noise levels demonstrates the robustness of our approach. The results from the experimental data show good agreement with expert analysis in the previous study; furthermore, the pipeline identifies minor crystallographic components that were previously overlooked. These results demonstrate that the pipeline enables robust and automated analysis with significantly reduced analysis cost.","PeriodicalId":19342,"journal":{"name":"npj Computational Materials","volume":"13 1","pages":""},"PeriodicalIF":13.1000,"publicationDate":"2026-10-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"npj Computational Materials","FirstCategoryId":"88","ListUrlMain":"https://doi.org/10.1038/s41524-026-02337-x","RegionNum":1,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0
Abstract
Four-dimensional scanning transmission electron microscopy (4D-STEM) is a high-throughput measurement used to comprehensively acquire diffraction patterns across a region of interest in a specimen. While the measurement is useful for identifying crystallographic microstructures, the data analysis requires significant effort owing to the complexity and high dimensionality of the data. Furthermore, the analysis of low signal-to-noise data from beam-sensitive materials such as polymers is particularly challenging. This study proposes an automatic analysis pipeline that leverages denoising and unsupervised crystallographic analysis for 4D-STEM data. The denoising method is based on a self-supervised approach that eliminates the need for clean training images. The developed method is extended to 4D-STEM data by utilizing diffraction patterns observed at neighboring probe positions. The subsequent unsupervised analysis is designed to be invariant to the crystal in-plane rotations, enabling the effective identification of crystal components. The efficacy of the proposed pipeline is evaluated using both synthetic and experimental 4D-STEM data. Quantitative evaluation for synthetic data across various noise levels demonstrates the robustness of our approach. The results from the experimental data show good agreement with expert analysis in the previous study; furthermore, the pipeline identifies minor crystallographic components that were previously overlooked. These results demonstrate that the pipeline enables robust and automated analysis with significantly reduced analysis cost.
期刊介绍:
npj Computational Materials is a high-quality open access journal from Nature Research that publishes research papers applying computational approaches for the design of new materials and enhancing our understanding of existing ones. The journal also welcomes papers on new computational techniques and the refinement of current approaches that support these aims, as well as experimental papers that complement computational findings.
Some key features of npj Computational Materials include a 2-year impact factor of 12.241 (2021), article downloads of 1,138,590 (2021), and a fast turnaround time of 11 days from submission to the first editorial decision. The journal is indexed in various databases and services, including Chemical Abstracts Service (ACS), Astrophysics Data System (ADS), Current Contents/Physical, Chemical and Earth Sciences, Journal Citation Reports/Science Edition, SCOPUS, EI Compendex, INSPEC, Google Scholar, SCImago, DOAJ, CNKI, and Science Citation Index Expanded (SCIE), among others.