Machine learning the entropy to estimate free energy differences without sampling transitions

IF 11.9 1区 材料科学 Q1 CHEMISTRY, PHYSICAL
Yamin Ben-Shimon, Barak Hirshberg, Yohai Bar-Sinai
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引用次数: 0

Abstract

Thermodynamic phase transitions, a central concept in physics and chemistry, are typically controlled by an interplay of enthalpic and entropic contributions. In most cases, the estimation of the enthalpy in simulations is straightforward but evaluating the entropy is notoriously hard. As a result, it is common to induce transitions between the metastable states and estimate their relative occupancies, from which the free energy difference can be inferred. However, for systems with large free energy barriers, sampling these transitions is a significant computational challenge. Dedicated enhanced sampling algorithms require significant prior knowledge of the slow modes governing the transition, which is typically unavailable. We present an alternative approach, which only uses short simulations of each phase separately. We achieve this by employing a recently developed deep learning model for estimating the entropy and hence the free energy of each metastable state. We benchmark our approach by calculating the free energies of crystalline and liquid metals. Our method features state-of-the-art precision in estimating the melting transition temperature in Na and Al without requiring any prior information or simulation of the transition pathway itself.
机器学习的熵估计自由能差没有采样过渡
热力学相变是物理和化学中的一个中心概念,通常是由焓和熵的相互作用控制的。在大多数情况下,模拟中焓的估计是直接的,但熵的估计是出了名的困难。因此,通常在亚稳态之间诱导跃迁并估计它们的相对占位率,由此可以推断出自由能差。然而,对于具有大自由能势垒的系统,对这些跃迁进行采样是一个重大的计算挑战。专用的增强采样算法需要对控制过渡的慢模式有重要的先验知识,这通常是不可用的。我们提出了一种替代方法,它只对每个阶段分别进行简短的模拟。我们通过采用最近开发的深度学习模型来估计熵和每个亚稳态的自由能来实现这一点。我们通过计算晶体和液态金属的自由能来测试我们的方法。我们的方法在估计Na和Al的熔化转变温度方面具有最先进的精度,而不需要任何先验信息或转变途径本身的模拟。
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来源期刊
npj Computational Materials
npj Computational Materials Mathematics-Modeling and Simulation
CiteScore
15.30
自引率
5.20%
发文量
229
审稿时长
6 weeks
期刊介绍: npj Computational Materials is a high-quality open access journal from Nature Research that publishes research papers applying computational approaches for the design of new materials and enhancing our understanding of existing ones. The journal also welcomes papers on new computational techniques and the refinement of current approaches that support these aims, as well as experimental papers that complement computational findings. Some key features of npj Computational Materials include a 2-year impact factor of 12.241 (2021), article downloads of 1,138,590 (2021), and a fast turnaround time of 11 days from submission to the first editorial decision. The journal is indexed in various databases and services, including Chemical Abstracts Service (ACS), Astrophysics Data System (ADS), Current Contents/Physical, Chemical and Earth Sciences, Journal Citation Reports/Science Edition, SCOPUS, EI Compendex, INSPEC, Google Scholar, SCImago, DOAJ, CNKI, and Science Citation Index Expanded (SCIE), among others.
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