Exploring the Potential Mechanism of Smilax Glabra Roxb in Periodontitis Through Network Pharmacology and Molecular Docking.

IF 2.8 4区 医学 Q2 PHARMACOLOGY & PHARMACY
Jinjia Hong, Peilun Ma, Yuan Zhang, Na Li, Pengfei Zhang, Chunrui Tian, Yukang Cao, Xing Wang
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引用次数: 0

Abstract

Introduction: This study aims to explore the potential mechanisms of Smilax Glabra Roxb (SGR) in the treatment of periodontitis using network pharmacology and molecular docking.

Methods: The active components and targets of SGR were identified using the TCMSP, STITCH, and SwissTargetPrediction databases, while periodontitis-related targets were retrieved from GeneCards, TTD, and OMIM. Overlapping targets were subjected to Protein-Protein Interaction (PPI) analysis via the STRING platform, followed by network analysis using Cytoscape software and the MCODE plugin to identify key protein targets. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were conducted through the DAVID database to determine relevant biological processes and pathways. Finally, molecular docking was performed to assess the binding affinity between the key active components of SGR and critical target and pathway proteins.

Results: A total of 15 active components and 527 potential targets of SGR were identified, along with 367 targets related to periodontitis. The 75 overlapping targets were considered potential therapeutic targets. Key genes, such as IL-6, IL-1β, and TNF, were identified through Cytoscape analysis. KEGG enrichment analysis indicated that the overlapping targets are primarily involved in inflammatory and metabolic pathways, including the AGE-RAGE signaling pathway, the lipid and atherosclerosis pathway, and the TNF signaling pathway. Molecular docking results showed that the key active components can stably bind to the critical targets and pathway proteins.

Discussion: SGR may have particular advantages in treating periodontitis in patients with systemic diseases, such as diabetes and cardiovascular conditions, but further research is needed to validate its clinical efficacy and safety.

Conclusion: This study highlights the therapeutic potential of SGR in the treatment of periodontitis and elucidates its possible molecular mechanisms, offering new insights and targets for periodontitis therapy.

通过网络药理学和分子对接探索光菝葜治疗牙周炎的潜在机制。
摘要:本研究旨在利用网络药理学和分子对接技术,探讨菝葜(Smilax Glabra Roxb, SGR)治疗牙周炎的潜在机制。方法:使用TCMSP、STITCH和SwissTargetPrediction数据库鉴定SGR的活性成分和靶点,同时从GeneCards、TTD和OMIM中检索牙周炎相关靶点。通过STRING平台对重叠靶点进行蛋白-蛋白相互作用(protein - protein Interaction, PPI)分析,然后使用Cytoscape软件和MCODE插件进行网络分析,确定关键蛋白靶点。通过DAVID数据库进行基因本体(GO)和京都基因与基因组百科全书(KEGG)途径富集分析,确定相关的生物学过程和途径。最后,进行分子对接,评估SGR关键活性成分与关键靶蛋白和途径蛋白的结合亲和力。结果:共鉴定出15种有效成分和527种SGR潜在靶点,以及367种与牙周炎相关的靶点。75个重叠靶点被认为是潜在的治疗靶点。关键基因,如IL-6、IL-1β和TNF,通过Cytoscape分析鉴定。KEGG富集分析表明,重叠靶点主要参与炎症和代谢途径,包括AGE-RAGE信号通路、脂质和动脉粥样硬化途径以及TNF信号通路。分子对接结果表明,关键活性成分能够稳定结合关键靶点和途径蛋白。讨论:SGR在治疗糖尿病和心血管疾病等全身性疾病患者的牙周炎方面可能具有特别的优势,但需要进一步的研究来验证其临床疗效和安全性。结论:本研究突出了SGR治疗牙周炎的潜力,并阐明了其可能的分子机制,为牙周炎治疗提供了新的见解和靶点。
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来源期刊
CiteScore
6.30
自引率
0.00%
发文量
302
审稿时长
2 months
期刊介绍: Current Pharmaceutical Design publishes timely in-depth reviews and research articles from leading pharmaceutical researchers in the field, covering all aspects of current research in rational drug design. Each issue is devoted to a single major therapeutic area guest edited by an acknowledged authority in the field. Each thematic issue of Current Pharmaceutical Design covers all subject areas of major importance to modern drug design including: medicinal chemistry, pharmacology, drug targets and disease mechanism.
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