Advancing cancer care: unravelling genomic insights for precision medicine using meticulous predictive architecture.

IF 1.7 4区 医学 Q3 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
Swati B Bhonde, Sharmila K Wagh, Jayashree R Prasad
{"title":"Advancing cancer care: unravelling genomic insights for precision medicine using meticulous predictive architecture.","authors":"Swati B Bhonde, Sharmila K Wagh, Jayashree R Prasad","doi":"10.1080/10255842.2025.2477809","DOIUrl":null,"url":null,"abstract":"<p><p>Advancements in genomic profiling have significantly enhanced oncology by enabling precise tumor classification. However, challenges such as high dimensionality and limited sample sizes persist. This study presents a predictive modeling framework integrating t-distributed stochastic neighbor embedding (t-SNE) with Kullback-Leibler divergence and Shannon entropy reduction for efficient dimensionality reduction. A hybrid decisive random forest classifier further enhances model robustness and generalizability. Evaluated on the TCGA Pancancer dataset encompassing five cancer types, the proposed model achieved 99% accuracy, demonstrating superior sensitivity and specificity. This approach provides a reliable and interpretable solution for cancer subtype classification, facilitating improved genomic-based diagnostics.</p>","PeriodicalId":50640,"journal":{"name":"Computer Methods in Biomechanics and Biomedical Engineering","volume":" ","pages":"1-18"},"PeriodicalIF":1.7000,"publicationDate":"2025-03-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computer Methods in Biomechanics and Biomedical Engineering","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1080/10255842.2025.2477809","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
引用次数: 0

Abstract

Advancements in genomic profiling have significantly enhanced oncology by enabling precise tumor classification. However, challenges such as high dimensionality and limited sample sizes persist. This study presents a predictive modeling framework integrating t-distributed stochastic neighbor embedding (t-SNE) with Kullback-Leibler divergence and Shannon entropy reduction for efficient dimensionality reduction. A hybrid decisive random forest classifier further enhances model robustness and generalizability. Evaluated on the TCGA Pancancer dataset encompassing five cancer types, the proposed model achieved 99% accuracy, demonstrating superior sensitivity and specificity. This approach provides a reliable and interpretable solution for cancer subtype classification, facilitating improved genomic-based diagnostics.

基因组剖析技术的进步通过实现精确的肿瘤分类,极大地促进了肿瘤学的发展。然而,高维度和样本量有限等挑战依然存在。本研究提出了一种预测建模框架,该框架将 t 分布随机邻域嵌入(t-SNE)与库尔贝-莱布勒发散和香农熵降低整合在一起,以实现高效降维。混合决定性随机森林分类器进一步增强了模型的稳健性和普适性。通过对包含五种癌症类型的 TCGA 胰腺癌数据集进行评估,所提出的模型达到了 99% 的准确率,显示出卓越的灵敏度和特异性。这种方法为癌症亚型分类提供了可靠、可解释的解决方案,有助于改进基于基因组的诊断。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
CiteScore
4.10
自引率
6.20%
发文量
179
审稿时长
4-8 weeks
期刊介绍: The primary aims of Computer Methods in Biomechanics and Biomedical Engineering are to provide a means of communicating the advances being made in the areas of biomechanics and biomedical engineering and to stimulate interest in the continually emerging computer based technologies which are being applied in these multidisciplinary subjects. Computer Methods in Biomechanics and Biomedical Engineering will also provide a focus for the importance of integrating the disciplines of engineering with medical technology and clinical expertise. Such integration will have a major impact on health care in the future.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信