Swati B Bhonde, Sharmila K Wagh, Jayashree R Prasad
{"title":"Advancing cancer care: unravelling genomic insights for precision medicine using meticulous predictive architecture.","authors":"Swati B Bhonde, Sharmila K Wagh, Jayashree R Prasad","doi":"10.1080/10255842.2025.2477809","DOIUrl":null,"url":null,"abstract":"<p><p>Advancements in genomic profiling have significantly enhanced oncology by enabling precise tumor classification. However, challenges such as high dimensionality and limited sample sizes persist. This study presents a predictive modeling framework integrating t-distributed stochastic neighbor embedding (t-SNE) with Kullback-Leibler divergence and Shannon entropy reduction for efficient dimensionality reduction. A hybrid decisive random forest classifier further enhances model robustness and generalizability. Evaluated on the TCGA Pancancer dataset encompassing five cancer types, the proposed model achieved 99% accuracy, demonstrating superior sensitivity and specificity. This approach provides a reliable and interpretable solution for cancer subtype classification, facilitating improved genomic-based diagnostics.</p>","PeriodicalId":50640,"journal":{"name":"Computer Methods in Biomechanics and Biomedical Engineering","volume":" ","pages":"1-18"},"PeriodicalIF":1.7000,"publicationDate":"2025-03-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computer Methods in Biomechanics and Biomedical Engineering","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1080/10255842.2025.2477809","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
引用次数: 0
Abstract
Advancements in genomic profiling have significantly enhanced oncology by enabling precise tumor classification. However, challenges such as high dimensionality and limited sample sizes persist. This study presents a predictive modeling framework integrating t-distributed stochastic neighbor embedding (t-SNE) with Kullback-Leibler divergence and Shannon entropy reduction for efficient dimensionality reduction. A hybrid decisive random forest classifier further enhances model robustness and generalizability. Evaluated on the TCGA Pancancer dataset encompassing five cancer types, the proposed model achieved 99% accuracy, demonstrating superior sensitivity and specificity. This approach provides a reliable and interpretable solution for cancer subtype classification, facilitating improved genomic-based diagnostics.
期刊介绍:
The primary aims of Computer Methods in Biomechanics and Biomedical Engineering are to provide a means of communicating the advances being made in the areas of biomechanics and biomedical engineering and to stimulate interest in the continually emerging computer based technologies which are being applied in these multidisciplinary subjects. Computer Methods in Biomechanics and Biomedical Engineering will also provide a focus for the importance of integrating the disciplines of engineering with medical technology and clinical expertise. Such integration will have a major impact on health care in the future.