Chen Cheng , Yao Li , Chunyan Wang , Yanli Yang , Hao Guo
{"title":"Structure and dynamics analysis of brain functional hypernetworks based on the null models","authors":"Chen Cheng , Yao Li , Chunyan Wang , Yanli Yang , Hao Guo","doi":"10.1016/j.brainresbull.2024.111177","DOIUrl":null,"url":null,"abstract":"<div><div>Brain functional hypernetworks that can characterize the complex and multivariate interactions among multiple brain regions have been widely used in the diagnosis and prediction of brain diseases. However, there are few studies on the structure and dynamics of brain functional hypernetworks. Such studies can help to explore how the important functional features of brain functional hypernetworks characterize the working and pathological mechanisms of the human brain. Therefore, this article introduces the hypernetwork null model to analyze the dependencies between the features of interest. Specifically, first, based on the original brain functional hypernetwork, this article proposed the optimized hyper dK-series algorithm with hyperedges to construct null models that preserved the different node attributes and hyperedge attributes of the original brain functional hypernetwork, respectively. Next, based on the original hypernetwork model and the null model, multiple node attributes and hyperedge attributes were respectively introduced. Then, the level of similarity and correlation between the topological attributes of the original brain functional hypernetwork and the topological attributes of the brain functional hypernetwork null model were calculated to analyze the dependencies between the features of interest. The results showed that there were differences in the level of dependence between the features of interest. Node degree is the main dependency attribute for multiple metrics. Hyperedge degree, node degree-dependent redundancy coefficient, and hyperedge degree-dependent redundancy coefficient are partial dependency attributes for some metrics. The dependency attributes and level of dependency are the same for the hypernetwork clustering coefficients—HCC<sup>2</sup> and HCC<sup>3</sup>. This indicates that the node degree is redundant with respect to other attributes, while the hyperedge degree, node degree-dependent redundancy coefficient, and hyperedge degree-dependent redundancy coefficient perhaps contain other topology information. In addition, there is redundancy between HCC<sup>2</sup> and HCC<sup>3</sup>. Therefore, the effects of these redundant attributes need to be considered when performing network analysis.</div></div>","PeriodicalId":9302,"journal":{"name":"Brain Research Bulletin","volume":"220 ","pages":"Article 111177"},"PeriodicalIF":3.5000,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Brain Research Bulletin","FirstCategoryId":"3","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0361923024003113","RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"NEUROSCIENCES","Score":null,"Total":0}
引用次数: 0
Abstract
Brain functional hypernetworks that can characterize the complex and multivariate interactions among multiple brain regions have been widely used in the diagnosis and prediction of brain diseases. However, there are few studies on the structure and dynamics of brain functional hypernetworks. Such studies can help to explore how the important functional features of brain functional hypernetworks characterize the working and pathological mechanisms of the human brain. Therefore, this article introduces the hypernetwork null model to analyze the dependencies between the features of interest. Specifically, first, based on the original brain functional hypernetwork, this article proposed the optimized hyper dK-series algorithm with hyperedges to construct null models that preserved the different node attributes and hyperedge attributes of the original brain functional hypernetwork, respectively. Next, based on the original hypernetwork model and the null model, multiple node attributes and hyperedge attributes were respectively introduced. Then, the level of similarity and correlation between the topological attributes of the original brain functional hypernetwork and the topological attributes of the brain functional hypernetwork null model were calculated to analyze the dependencies between the features of interest. The results showed that there were differences in the level of dependence between the features of interest. Node degree is the main dependency attribute for multiple metrics. Hyperedge degree, node degree-dependent redundancy coefficient, and hyperedge degree-dependent redundancy coefficient are partial dependency attributes for some metrics. The dependency attributes and level of dependency are the same for the hypernetwork clustering coefficients—HCC2 and HCC3. This indicates that the node degree is redundant with respect to other attributes, while the hyperedge degree, node degree-dependent redundancy coefficient, and hyperedge degree-dependent redundancy coefficient perhaps contain other topology information. In addition, there is redundancy between HCC2 and HCC3. Therefore, the effects of these redundant attributes need to be considered when performing network analysis.
期刊介绍:
The Brain Research Bulletin (BRB) aims to publish novel work that advances our knowledge of molecular and cellular mechanisms that underlie neural network properties associated with behavior, cognition and other brain functions during neurodevelopment and in the adult. Although clinical research is out of the Journal''s scope, the BRB also aims to publish translation research that provides insight into biological mechanisms and processes associated with neurodegeneration mechanisms, neurological diseases and neuropsychiatric disorders. The Journal is especially interested in research using novel methodologies, such as optogenetics, multielectrode array recordings and life imaging in wild-type and genetically-modified animal models, with the goal to advance our understanding of how neurons, glia and networks function in vivo.