{"title":"Expansion of the early warning system for avian influenza in the EU to evaluate the risk of spillover from wild birds to poultry","authors":"Céline Faverjon, Angela Fanelli, Angus Cameron","doi":"10.2903/sp.efsa.2024.EN-9114","DOIUrl":null,"url":null,"abstract":"<p>Highly pathogenic avian influenza (HPAI) poses a significant threat to both poultry and wild birds. To help tackle this challenge, an early warning system for HPAI in wild birds based on spatio-temporal risk mapping, the Bird Flu Radar, has previously been developed by EFSA. This work focuses on the expansion of the existing model to assess the risk of introduction and establishment of HPAI in poultry. First, a literature review was conducted to identify the risk factors for virus introduction from wild birds into poultry farms and the availability of associated data in Europe. Second, a theoretical modelling framework was developed to assess, on a grid of 50 x 50 km cells, the relative weekly probability of HPAI introduction in at least one domestic poultry flock because of infectious wild birds. This probability was estimated as the combination of two probabilities: the probability of HPAI entry into the flock and the probability of HPAI establishment in the domestic poultry population. The model outcomes are computed for all farms together but also for twelve types of farms separately. Farm types were defined based on their production type and poultry species kept. Italy and France were used a case study to test the model performance over one year of data (February 2023 to March 2024), comparing model predictions with outbreaks reported as primary outbreaks in the European Union (EU) Animal Disease Information System (ADIS). For Italy, the model performances were good, with all the outbreaks being detected in areas within or close to high-risk spatio-temporal units. The results obtained for France were more mixed: several outbreaks were reported in high-risk areas, but some were missed, apparently due to the high influence of some key model parameters and geographical specificity. Indeed, all the outbreaks reported in Southwest France were not predicted by the proposed model. These first results are encouraging, but future work should focus on finding ways to adjust certain model parameters and to improve the assessment of model performance considering a longer time period and/or including more robust input data.</p>","PeriodicalId":100395,"journal":{"name":"EFSA Supporting Publications","volume":"21 11","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-11-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.2903/sp.efsa.2024.EN-9114","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"EFSA Supporting Publications","FirstCategoryId":"1085","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.2903/sp.efsa.2024.EN-9114","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
Highly pathogenic avian influenza (HPAI) poses a significant threat to both poultry and wild birds. To help tackle this challenge, an early warning system for HPAI in wild birds based on spatio-temporal risk mapping, the Bird Flu Radar, has previously been developed by EFSA. This work focuses on the expansion of the existing model to assess the risk of introduction and establishment of HPAI in poultry. First, a literature review was conducted to identify the risk factors for virus introduction from wild birds into poultry farms and the availability of associated data in Europe. Second, a theoretical modelling framework was developed to assess, on a grid of 50 x 50 km cells, the relative weekly probability of HPAI introduction in at least one domestic poultry flock because of infectious wild birds. This probability was estimated as the combination of two probabilities: the probability of HPAI entry into the flock and the probability of HPAI establishment in the domestic poultry population. The model outcomes are computed for all farms together but also for twelve types of farms separately. Farm types were defined based on their production type and poultry species kept. Italy and France were used a case study to test the model performance over one year of data (February 2023 to March 2024), comparing model predictions with outbreaks reported as primary outbreaks in the European Union (EU) Animal Disease Information System (ADIS). For Italy, the model performances were good, with all the outbreaks being detected in areas within or close to high-risk spatio-temporal units. The results obtained for France were more mixed: several outbreaks were reported in high-risk areas, but some were missed, apparently due to the high influence of some key model parameters and geographical specificity. Indeed, all the outbreaks reported in Southwest France were not predicted by the proposed model. These first results are encouraging, but future work should focus on finding ways to adjust certain model parameters and to improve the assessment of model performance considering a longer time period and/or including more robust input data.
高致病性禽流感(HPAI)对家禽和野生鸟类都构成重大威胁。为了帮助应对这一挑战,欧洲食品安全局以前开发了一个基于时空风险测绘的野生鸟类高致病性禽流感早期预警系统,即禽流感雷达。这项工作的重点是扩大现有模型,以评估在家禽中引入和建立高致病性禽流感的风险。首先,进行了文献综述,以确定病毒从野生鸟类传入家禽养殖场的危险因素以及欧洲相关数据的可用性。其次,开发了一个理论建模框架,以50 x 50公里单元格为网格,评估因传染性野生鸟类在至少一个家禽群中引入高致病性禽流感的相对每周概率。这一概率是用两种概率的组合来估计的:高致病性禽流感进入禽群的概率和高致病性禽流感在家禽种群中建立的概率。模型结果是对所有农场一起计算的,但也对12种类型的农场分别计算。根据其生产类型和饲养的家禽种类确定农场类型。意大利和法国在一个案例研究中测试了模型在一年数据(2023年2月至2024年3月)中的表现,并将模型预测与欧盟(EU)动物疾病信息系统(ADIS)中报告的主要疫情进行了比较。意大利的模型表现良好,所有疫情都是在高风险时空单元内或附近地区发现的。法国获得的结果则更为复杂:在高风险地区报告了几次暴发,但有些暴发未被发现,这显然是由于某些关键模型参数的高度影响和地理特殊性。事实上,拟议的模型并没有预测到法国西南部报告的所有疫情。这些最初的结果是令人鼓舞的,但未来的工作应该集中在寻找调整某些模型参数的方法,并考虑更长的时间周期和/或包括更健壮的输入数据来改进模型性能的评估。