CASE-DFT Structure Elucidation of Proton-Deficient Chlorodepsidones from the Indonesian Lichen Teloschistes flavicans and Structure Revision of Flavicansone.

IF 3.3 2区 生物学 Q2 CHEMISTRY, MEDICINAL
Journal of Natural Products Pub Date : 2024-09-27 Epub Date: 2024-05-23 DOI:10.1021/acs.jnatprod.4c00277
Solenn Ferron, Friardi Ismed, Mikhail E Elyashberg, Alexei V Buevich, Nurwahidatul Arifa, Joël Boustie, Philippe Uriac, Pierre Le Pogam, Françoise Le Dévéhat
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Abstract

Biodiscovery efforts in Indonesia have aimed to explore the understudied chemical diversity of its rich lichen flora, seeking to find new products endowed with significant biological properties. The chemical screening of a Teloschistes flavicans extract led to selection of this species for further investigation. LC/MS and 1H NMR-based dereplication pinpointed six chlorodepsidones from the thallus of a sample of this lichen. This led to the streamlined isolation and the subsequent structure elucidation of the three new compounds norflavicansone 1, flavicansone 2, and isocaloploicin 3, along with the known chlorodepsidones 4-6, stictic acid 7, aurantiamide acetate 8, and parietin 9. The challenging structure elucidation of these proton-deficient metabolites benefited from a state-of-the-art workflow involving a synergistic combination of Computer-Assisted Structure Elucidation (CASE) and Density Functional Theory (DFT) calculations of the top-ranked candidates. This investigation also led to the revision of flavicansone's structure, previously described from this species. The three new molecules that are being reported here are remarkable in that they represent hybrid depsidones in which one of the aromatic rings is derived from orsellinic acid and the other is derived from β-orcinol, a rare structural feature for lichen depsidones.

Abstract Image

CASE-DFT 印度尼西亚地衣中缺失质子的 Chlorodepsidones 的结构解析及 Flavicansone 的结构修订。
印度尼西亚的生物发现工作旨在探索其丰富的地衣植物区系中未被充分研究的化学多样性,寻求具有重要生物特性的新产品。通过对 Teloschistes flavicans 提取物进行化学筛选,最终选择了该物种进行进一步研究。通过 LC/MS 和基于 1H NMR 的去复制,从该地衣样本的苔藓中确定了六种氯代epsidones。这导致了三个新化合物norflavicansone 1、flavicansone 2和isocaloploicin 3,以及已知的氯epsidones 4-6、stictic acid 7、aurantiamide acetate 8和parietin 9的简化分离和随后的结构阐明。对这些质子缺乏的代谢物进行具有挑战性的结构阐释得益于最先进的工作流程,其中包括对排名靠前的候选化合物进行计算机辅助结构阐释(CASE)和密度泛函理论(DFT)计算的协同组合。这项研究还对该物种以前描述的黄烷酮结构进行了修正。本文报告的三个新分子的显著特点是它们代表了混合去苷酮,其中一个芳香环来自橙皮苷酸,另一个来自β-鸟嘌呤醇,这在地衣去苷酮中是罕见的结构特征。
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来源期刊
CiteScore
9.10
自引率
5.90%
发文量
294
审稿时长
2.3 months
期刊介绍: The Journal of Natural Products invites and publishes papers that make substantial and scholarly contributions to the area of natural products research. Contributions may relate to the chemistry and/or biochemistry of naturally occurring compounds or the biology of living systems from which they are obtained. Specifically, there may be articles that describe secondary metabolites of microorganisms, including antibiotics and mycotoxins; physiologically active compounds from terrestrial and marine plants and animals; biochemical studies, including biosynthesis and microbiological transformations; fermentation and plant tissue culture; the isolation, structure elucidation, and chemical synthesis of novel compounds from nature; and the pharmacology of compounds of natural origin. When new compounds are reported, manuscripts describing their biological activity are much preferred. Specifically, there may be articles that describe secondary metabolites of microorganisms, including antibiotics and mycotoxins; physiologically active compounds from terrestrial and marine plants and animals; biochemical studies, including biosynthesis and microbiological transformations; fermentation and plant tissue culture; the isolation, structure elucidation, and chemical synthesis of novel compounds from nature; and the pharmacology of compounds of natural origin.
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