Lirui Liu, Jiayi Li, Yuhan Huang, Jie Pan, Meng Li
{"title":"从红树林沉积物中分离出的沉积假单胞菌。","authors":"Lirui Liu, Jiayi Li, Yuhan Huang, Jie Pan, Meng Li","doi":"10.1099/ijsem.0.005975","DOIUrl":null,"url":null,"abstract":"<p><p>A Gram-stain-negative, facultatively aerobic, motile and ovoid- to rod-shaped bacterium, designated as FT324<sup>T</sup>, was isolated from a surface mangrove sediment sample from Shenzhen, PR China. The taxonomic position of strain FT324<sup>T</sup> was determined by a combination of phylogenetic, physiological, biochemical and chemotaxonomic analyses. Strain FT324<sup>T</sup> grew at 20-40 °C (optimum, 30-37 °C), pH 5.0-9.0 (optimum, pH 8.0) and in the presence of 0-3 % (w/v) NaCl (optimum, 1 %). Its full-length 16S rRNA gene sequence was the most similar to <i>Frigidibacter oleivorans</i> XJ4<sup>T</sup> (97.4 %), followed by <i>Defluviimonas denitrificans</i> DSM 18921<sup>T</sup> (96.62 %), <i>Pseudothioclava arenosa</i> CAU 1312<sup>T</sup> (96.54 %) and <i>Defluviimonas nitratireducens</i> DL5-4<sup>T</sup> (96.47 %). The major fatty acids (>10 %) of FT324<sup>T</sup> were C<sub>19 : 0</sub> cyclo <i>ω</i>8<i>c</i> (51.9 %) and summed feature 8(29.6 %). The predominant respiratory quinone was Q-10. Its polar lipid profile contained phosphatidylethanolamine, phosphatidylmethylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, one unidentified aminolipid, one unidentified lipid and two unidentified phospholipids. Its estimated genome size was 4 294 115 bp and the genomic DNA G+C content was 69.6 mol%. Based on its distinct phenotypic, chemotaxonomic and phylogenetic characteristics, strain FT324<sup>T</sup> should represent a novel species of the genus <i>Defluviimonas</i>, for which the name <i>Defluviimonas sediminis</i> sp. nov. is proposed (=MCCC 1K07685<sup>T</sup>=KCTC 92477<sup>T</sup>).</p>","PeriodicalId":14390,"journal":{"name":"International journal of systematic and evolutionary microbiology","volume":"73 7","pages":""},"PeriodicalIF":2.0000,"publicationDate":"2023-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"<i>Defluviimonas sediminis</i> sp. nov., isolated from mangrove sediment.\",\"authors\":\"Lirui Liu, Jiayi Li, Yuhan Huang, Jie Pan, Meng Li\",\"doi\":\"10.1099/ijsem.0.005975\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>A Gram-stain-negative, facultatively aerobic, motile and ovoid- to rod-shaped bacterium, designated as FT324<sup>T</sup>, was isolated from a surface mangrove sediment sample from Shenzhen, PR China. The taxonomic position of strain FT324<sup>T</sup> was determined by a combination of phylogenetic, physiological, biochemical and chemotaxonomic analyses. Strain FT324<sup>T</sup> grew at 20-40 °C (optimum, 30-37 °C), pH 5.0-9.0 (optimum, pH 8.0) and in the presence of 0-3 % (w/v) NaCl (optimum, 1 %). Its full-length 16S rRNA gene sequence was the most similar to <i>Frigidibacter oleivorans</i> XJ4<sup>T</sup> (97.4 %), followed by <i>Defluviimonas denitrificans</i> DSM 18921<sup>T</sup> (96.62 %), <i>Pseudothioclava arenosa</i> CAU 1312<sup>T</sup> (96.54 %) and <i>Defluviimonas nitratireducens</i> DL5-4<sup>T</sup> (96.47 %). The major fatty acids (>10 %) of FT324<sup>T</sup> were C<sub>19 : 0</sub> cyclo <i>ω</i>8<i>c</i> (51.9 %) and summed feature 8(29.6 %). The predominant respiratory quinone was Q-10. Its polar lipid profile contained phosphatidylethanolamine, phosphatidylmethylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, one unidentified aminolipid, one unidentified lipid and two unidentified phospholipids. Its estimated genome size was 4 294 115 bp and the genomic DNA G+C content was 69.6 mol%. Based on its distinct phenotypic, chemotaxonomic and phylogenetic characteristics, strain FT324<sup>T</sup> should represent a novel species of the genus <i>Defluviimonas</i>, for which the name <i>Defluviimonas sediminis</i> sp. nov. is proposed (=MCCC 1K07685<sup>T</sup>=KCTC 92477<sup>T</sup>).</p>\",\"PeriodicalId\":14390,\"journal\":{\"name\":\"International journal of systematic and evolutionary microbiology\",\"volume\":\"73 7\",\"pages\":\"\"},\"PeriodicalIF\":2.0000,\"publicationDate\":\"2023-07-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"International journal of systematic and evolutionary microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1099/ijsem.0.005975\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"International journal of systematic and evolutionary microbiology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1099/ijsem.0.005975","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
Defluviimonas sediminis sp. nov., isolated from mangrove sediment.
A Gram-stain-negative, facultatively aerobic, motile and ovoid- to rod-shaped bacterium, designated as FT324T, was isolated from a surface mangrove sediment sample from Shenzhen, PR China. The taxonomic position of strain FT324T was determined by a combination of phylogenetic, physiological, biochemical and chemotaxonomic analyses. Strain FT324T grew at 20-40 °C (optimum, 30-37 °C), pH 5.0-9.0 (optimum, pH 8.0) and in the presence of 0-3 % (w/v) NaCl (optimum, 1 %). Its full-length 16S rRNA gene sequence was the most similar to Frigidibacter oleivorans XJ4T (97.4 %), followed by Defluviimonas denitrificans DSM 18921T (96.62 %), Pseudothioclava arenosa CAU 1312T (96.54 %) and Defluviimonas nitratireducens DL5-4T (96.47 %). The major fatty acids (>10 %) of FT324T were C19 : 0 cyclo ω8c (51.9 %) and summed feature 8(29.6 %). The predominant respiratory quinone was Q-10. Its polar lipid profile contained phosphatidylethanolamine, phosphatidylmethylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, one unidentified aminolipid, one unidentified lipid and two unidentified phospholipids. Its estimated genome size was 4 294 115 bp and the genomic DNA G+C content was 69.6 mol%. Based on its distinct phenotypic, chemotaxonomic and phylogenetic characteristics, strain FT324T should represent a novel species of the genus Defluviimonas, for which the name Defluviimonas sediminis sp. nov. is proposed (=MCCC 1K07685T=KCTC 92477T).
期刊介绍:
Published by the Microbiology Society and owned by the International Committee on Systematics of Prokaryotes (ICSP), a committee of the Bacteriology and Applied Microbiology Division of the International Union of Microbiological Societies, International Journal of Systematic and Evolutionary Microbiology is the leading forum for the publication of novel microbial taxa and the ICSP’s official journal of record for prokaryotic names.
The journal welcomes high-quality research on all aspects of microbial evolution, phylogenetics and systematics, encouraging submissions on all prokaryotes, yeasts, microfungi, protozoa and microalgae across the full breadth of systematics including:
Identification, characterisation and culture preservation
Microbial evolution and biodiversity
Molecular environmental work with strong taxonomic or evolutionary content
Nomenclature
Taxonomy and phylogenetics.