基于RGB图像的高效无创FHB估计。

IF 7.6 1区 农林科学 Q1 AGRONOMY
Dominik Rößle, Lukas Prey, Ludwig Ramgraber, Anja Hanemann, Daniel Cremers, Patrick Ole Noack, Torsten Schön
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引用次数: 1

摘要

小麦赤霉病(Fusarium head blight, FHB)是最常见的小麦病害之一,造成严重的产量损失和健康风险。有效的FHB表型对加速抗性育种至关重要,但目前使用的方法既耗时又昂贵。本文提出了一种使用红绿蓝(RGB)图像进行FHB严重程度估计的无创分类模型,无需进行大量预处理。该模型接受消费级低成本RGB相机拍摄的图像,并将FHB严重程度分为6个顺序级别。此外,我们还引入了一个新的数据集,该数据集由来自3个不同年份(2020年、2021年和2022年)的约3000幅图像组成,并由独立评分者对每张图像进行了2次FHB严重程度评估。我们使用了一个预训练的高效网络(大小为80),重新设计为回归模型。结果表明,互估者的信度(Cohen’s kappa, κ)大大低于实现的单个网络对评级者的结果,例如,2020年捕获的数据分别为0.68和0.76。当使用多年的数据进行训练并对独立年份的数据进行测试时,该模型显示出良好的泛化效果。因此,使用2020年和2021年的图像进行训练,2022年的图像进行测试,与仅使用一年数据训练的最佳网络相比,我们将F1w分数提高了0.14,准确率提高了0.11,κ提高了0.12,并将均方根误差降低了0.5。所提出的轻量级模型和方法可以部署在移动设备上,根据低成本RGB相机的图像自动客观地评估FHB严重程度。源代码和数据集可从https://github.com/cvims/FHB_classification获得。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Efficient Noninvasive FHB Estimation using RGB Images from a Novel Multiyear, Multirater Dataset.

Efficient Noninvasive FHB Estimation using RGB Images from a Novel Multiyear, Multirater Dataset.

Efficient Noninvasive FHB Estimation using RGB Images from a Novel Multiyear, Multirater Dataset.

Efficient Noninvasive FHB Estimation using RGB Images from a Novel Multiyear, Multirater Dataset.

Fusarium head blight (FHB) is one of the most prevalent wheat diseases, causing substantial yield losses and health risks. Efficient phenotyping of FHB is crucial for accelerating resistance breeding, but currently used methods are time-consuming and expensive. The present article suggests a noninvasive classification model for FHB severity estimation using red-green-blue (RGB) images, without requiring extensive preprocessing. The model accepts images taken from consumer-grade, low-cost RGB cameras and classifies the FHB severity into 6 ordinal levels. In addition, we introduce a novel dataset consisting of around 3,000 images from 3 different years (2020, 2021, and 2022) and 2 FHB severity assessments per image from independent raters. We used a pretrained EfficientNet (size b0), redesigned as a regression model. The results demonstrate that the interrater reliability (Cohen's kappa, κ) is substantially lower than the achieved individual network-to-rater results, e.g., 0.68 and 0.76 for the data captured in 2020, respectively. The model shows a generalization effect when trained with data from multiple years and tested on data from an independent year. Thus, using the images from 2020 and 2021 for training and 2022 for testing, we improved the F1w score by 0.14, the accuracy by 0.11, κ by 0.12, and reduced the root mean squared error by 0.5 compared to the best network trained only on a single year's data. The proposed lightweight model and methods could be deployed on mobile devices to automatically and objectively assess FHB severity with images from low-cost RGB cameras. The source code and the dataset are available at https://github.com/cvims/FHB_classification.

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来源期刊
Plant Phenomics
Plant Phenomics Multiple-
CiteScore
8.60
自引率
9.20%
发文量
26
审稿时长
14 weeks
期刊介绍: Plant Phenomics is an Open Access journal published in affiliation with the State Key Laboratory of Crop Genetics & Germplasm Enhancement, Nanjing Agricultural University (NAU) and published by the American Association for the Advancement of Science (AAAS). Like all partners participating in the Science Partner Journal program, Plant Phenomics is editorially independent from the Science family of journals. The mission of Plant Phenomics is to publish novel research that will advance all aspects of plant phenotyping from the cell to the plant population levels using innovative combinations of sensor systems and data analytics. Plant Phenomics aims also to connect phenomics to other science domains, such as genomics, genetics, physiology, molecular biology, bioinformatics, statistics, mathematics, and computer sciences. Plant Phenomics should thus contribute to advance plant sciences and agriculture/forestry/horticulture by addressing key scientific challenges in the area of plant phenomics. The scope of the journal covers the latest technologies in plant phenotyping for data acquisition, data management, data interpretation, modeling, and their practical applications for crop cultivation, plant breeding, forestry, horticulture, ecology, and other plant-related domains.
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