反身标准化和解决基因组学临床中的不确定性。

IF 2.9 2区 社会学 Q1 HISTORY & PHILOSOPHY OF SCIENCE
Social Studies of Science Pub Date : 2023-06-01 Epub Date: 2023-03-15 DOI:10.1177/03063127231154863
Adam Hedgecoe, Kathleen Job, Angus Clarke
{"title":"反身标准化和解决基因组学临床中的不确定性。","authors":"Adam Hedgecoe, Kathleen Job, Angus Clarke","doi":"10.1177/03063127231154863","DOIUrl":null,"url":null,"abstract":"<p><p>In genomics, the clinical application of Next Generation Sequencing technologies (such as Whole Genome or Exome Sequencing) has attracted considerable attention from UK policymakers, interested in the benefits such technologies could bring the National Health Service. However, this boosterism plays little attention to the challenges raised by a kind of result known as a Variant of Uncertain Significance, or VUS, which require clinical geneticists and related colleagues to classify ambiguous genomic variants as 'benign' or 'pathogenic'. With a rigorous analysis based on data gathered at 290 clinical meetings over a two-year period, this paper presents the first ethnographic account of decision-making around NGS technology in a NHS clinical genomics service, broadening our understanding of the role formal criteria play in the classification of VUS. Drawing on Stefan Timmermans' concept of 'reflexive standardisation' to explore the way in which clinical genetics staff classify such variants this paper explores the application of a set of criteria drafted by the American College of Medical Genetics and Genomics, highlighting the flexible way in which various resources - variant databases, computer programmes, the research literature - are drawn on to reach a decision. A crucial insight is how professionals' perception of, and trust in, the clinical practice at other genomics centres in the NHS, shapes their own application of criteria and the classification of a VUS as either benign or pathogenic.</p>","PeriodicalId":51152,"journal":{"name":"Social Studies of Science","volume":"53 3","pages":"358-378"},"PeriodicalIF":2.9000,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7614615/pdf/","citationCount":"0","resultStr":"{\"title\":\"Reflexive standardization and the resolution of uncertainty in the genomics clinic.\",\"authors\":\"Adam Hedgecoe, Kathleen Job, Angus Clarke\",\"doi\":\"10.1177/03063127231154863\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>In genomics, the clinical application of Next Generation Sequencing technologies (such as Whole Genome or Exome Sequencing) has attracted considerable attention from UK policymakers, interested in the benefits such technologies could bring the National Health Service. However, this boosterism plays little attention to the challenges raised by a kind of result known as a Variant of Uncertain Significance, or VUS, which require clinical geneticists and related colleagues to classify ambiguous genomic variants as 'benign' or 'pathogenic'. With a rigorous analysis based on data gathered at 290 clinical meetings over a two-year period, this paper presents the first ethnographic account of decision-making around NGS technology in a NHS clinical genomics service, broadening our understanding of the role formal criteria play in the classification of VUS. Drawing on Stefan Timmermans' concept of 'reflexive standardisation' to explore the way in which clinical genetics staff classify such variants this paper explores the application of a set of criteria drafted by the American College of Medical Genetics and Genomics, highlighting the flexible way in which various resources - variant databases, computer programmes, the research literature - are drawn on to reach a decision. A crucial insight is how professionals' perception of, and trust in, the clinical practice at other genomics centres in the NHS, shapes their own application of criteria and the classification of a VUS as either benign or pathogenic.</p>\",\"PeriodicalId\":51152,\"journal\":{\"name\":\"Social Studies of Science\",\"volume\":\"53 3\",\"pages\":\"358-378\"},\"PeriodicalIF\":2.9000,\"publicationDate\":\"2023-06-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7614615/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Social Studies of Science\",\"FirstCategoryId\":\"90\",\"ListUrlMain\":\"https://doi.org/10.1177/03063127231154863\",\"RegionNum\":2,\"RegionCategory\":\"社会学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2023/3/15 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q1\",\"JCRName\":\"HISTORY & PHILOSOPHY OF SCIENCE\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Social Studies of Science","FirstCategoryId":"90","ListUrlMain":"https://doi.org/10.1177/03063127231154863","RegionNum":2,"RegionCategory":"社会学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2023/3/15 0:00:00","PubModel":"Epub","JCR":"Q1","JCRName":"HISTORY & PHILOSOPHY OF SCIENCE","Score":null,"Total":0}
引用次数: 0

摘要

在基因组学领域,下一代测序技术(如全基因组测序或外显子组测序)的临床应用引起了英国政策制定者的极大关注,他们对此类技术能为国民健康服务带来的好处很感兴趣。然而,这种鼓吹却很少关注一种被称为 "意义不确定变异"(Variant of Uncertain Significance,简称 VUS)的结果所带来的挑战,这种结果要求临床遗传学家和相关同行将模糊的基因组变异分为 "良性 "或 "致病性"。本文基于两年内 290 次临床会议收集的数据进行了严谨的分析,首次以人种学的方式描述了 NHS 临床基因组学服务中围绕 NGS 技术的决策,拓宽了我们对正式标准在 VUS 分类中所起作用的理解。本文借鉴斯蒂芬-蒂默曼斯(Stefan Timmermans)的 "反思性标准化 "概念,探讨了临床遗传学工作人员对此类变异进行分类的方式,并探讨了美国医学遗传学和基因组学学院起草的一套标准的应用情况,强调了各种资源(变异数据库、计算机程序、研究文献)在决策过程中的灵活应用方式。一个重要的见解是,专业人员对国家医疗服务系统(NHS)中其他基因组学中心临床实践的看法和信任如何影响他们自己对标准的应用,以及如何将 VUS 分类为良性或致病性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Reflexive standardization and the resolution of uncertainty in the genomics clinic.

Reflexive standardization and the resolution of uncertainty in the genomics clinic.

Reflexive standardization and the resolution of uncertainty in the genomics clinic.

Reflexive standardization and the resolution of uncertainty in the genomics clinic.

In genomics, the clinical application of Next Generation Sequencing technologies (such as Whole Genome or Exome Sequencing) has attracted considerable attention from UK policymakers, interested in the benefits such technologies could bring the National Health Service. However, this boosterism plays little attention to the challenges raised by a kind of result known as a Variant of Uncertain Significance, or VUS, which require clinical geneticists and related colleagues to classify ambiguous genomic variants as 'benign' or 'pathogenic'. With a rigorous analysis based on data gathered at 290 clinical meetings over a two-year period, this paper presents the first ethnographic account of decision-making around NGS technology in a NHS clinical genomics service, broadening our understanding of the role formal criteria play in the classification of VUS. Drawing on Stefan Timmermans' concept of 'reflexive standardisation' to explore the way in which clinical genetics staff classify such variants this paper explores the application of a set of criteria drafted by the American College of Medical Genetics and Genomics, highlighting the flexible way in which various resources - variant databases, computer programmes, the research literature - are drawn on to reach a decision. A crucial insight is how professionals' perception of, and trust in, the clinical practice at other genomics centres in the NHS, shapes their own application of criteria and the classification of a VUS as either benign or pathogenic.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Social Studies of Science
Social Studies of Science 管理科学-科学史与科学哲学
CiteScore
5.70
自引率
6.70%
发文量
45
审稿时长
>12 weeks
期刊介绍: Social Studies of Science is an international peer reviewed journal that encourages submissions of original research on science, technology and medicine. The journal is multidisciplinary, publishing work from a range of fields including: political science, sociology, economics, history, philosophy, psychology social anthropology, legal and educational disciplines. This journal is a member of the Committee on Publication Ethics (COPE)
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信