Yong Heng Phua , Javier Tejeda , Michael C. Roy , Filip Husnik , Kevin C. Wakeman
{"title":"来自日本冲绳岛太平洋上的虾链藻(Dinophyceae)的细菌群落和毒素谱","authors":"Yong Heng Phua , Javier Tejeda , Michael C. Roy , Filip Husnik , Kevin C. Wakeman","doi":"10.1016/j.ejop.2023.125976","DOIUrl":null,"url":null,"abstract":"<div><p><span>Variations in toxicity of the benthic dinoflagellate </span><em>Ostreopsis</em><span><span> Schmidt 1901 have been attributed to specific molecular clades, biogeography of isolated strains, and the associated </span>bacterial community. Here, we attempted to better understand the biodiversity and the basic biology influencing toxin production of </span><em>Ostreopsis</em><span><span>. Nine clonal cultures were established from Okinawa, Japan, and identified using phylogenetic analysis of the ITS-5.8S rRNA and 28S </span>rRNA genes. Morphological analysis suggests that the apical pore complex L/W ratio could be a feature for differentiating </span><em>Ostreopsis</em> sp. 2 from the <em>O. ovata</em><span> species complex. We analyzed the toxicity and bacterial communities using liquid chromatography-mass spectrometry, and PCR-free metagenomic sequencing. Ovatoxin was detected in three of the seven strains of </span><em>O</em>. cf. <em>ovata</em> extracts<em>,</em> highlighting intraspecies variation in toxin production. Additionally, two new potential analogs of ovatoxin-a and ostreocin-A were identified. Commonly associated bacteria clades of <em>Ostreopsis</em> were identified from the established cultures. While some of these bacteria groups may be common to <em>Ostreopsis</em> (Rhodobacterales, Flavobacteria-Sphingobacteria, and Enterobacterales)<em>,</em><span> it was not clear from our analysis if any one or more of these plays a role in toxin biosynthesis. Further examination of biosynthetic pathways in metagenomic data and additional experiments isolating specific bacteria from </span><em>Ostreopsis</em> would aid these efforts.</p></div>","PeriodicalId":12042,"journal":{"name":"European journal of protistology","volume":"89 ","pages":"Article 125976"},"PeriodicalIF":1.9000,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Bacterial communities and toxin profiles of Ostreopsis (Dinophyceae) from the Pacific island of Okinawa, Japan\",\"authors\":\"Yong Heng Phua , Javier Tejeda , Michael C. Roy , Filip Husnik , Kevin C. Wakeman\",\"doi\":\"10.1016/j.ejop.2023.125976\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p><span>Variations in toxicity of the benthic dinoflagellate </span><em>Ostreopsis</em><span><span> Schmidt 1901 have been attributed to specific molecular clades, biogeography of isolated strains, and the associated </span>bacterial community. Here, we attempted to better understand the biodiversity and the basic biology influencing toxin production of </span><em>Ostreopsis</em><span><span>. Nine clonal cultures were established from Okinawa, Japan, and identified using phylogenetic analysis of the ITS-5.8S rRNA and 28S </span>rRNA genes. Morphological analysis suggests that the apical pore complex L/W ratio could be a feature for differentiating </span><em>Ostreopsis</em> sp. 2 from the <em>O. ovata</em><span> species complex. We analyzed the toxicity and bacterial communities using liquid chromatography-mass spectrometry, and PCR-free metagenomic sequencing. Ovatoxin was detected in three of the seven strains of </span><em>O</em>. cf. <em>ovata</em> extracts<em>,</em> highlighting intraspecies variation in toxin production. Additionally, two new potential analogs of ovatoxin-a and ostreocin-A were identified. Commonly associated bacteria clades of <em>Ostreopsis</em> were identified from the established cultures. While some of these bacteria groups may be common to <em>Ostreopsis</em> (Rhodobacterales, Flavobacteria-Sphingobacteria, and Enterobacterales)<em>,</em><span> it was not clear from our analysis if any one or more of these plays a role in toxin biosynthesis. Further examination of biosynthetic pathways in metagenomic data and additional experiments isolating specific bacteria from </span><em>Ostreopsis</em> would aid these efforts.</p></div>\",\"PeriodicalId\":12042,\"journal\":{\"name\":\"European journal of protistology\",\"volume\":\"89 \",\"pages\":\"Article 125976\"},\"PeriodicalIF\":1.9000,\"publicationDate\":\"2023-06-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"European journal of protistology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0932473923000214\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"European journal of protistology","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0932473923000214","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
Bacterial communities and toxin profiles of Ostreopsis (Dinophyceae) from the Pacific island of Okinawa, Japan
Variations in toxicity of the benthic dinoflagellate Ostreopsis Schmidt 1901 have been attributed to specific molecular clades, biogeography of isolated strains, and the associated bacterial community. Here, we attempted to better understand the biodiversity and the basic biology influencing toxin production of Ostreopsis. Nine clonal cultures were established from Okinawa, Japan, and identified using phylogenetic analysis of the ITS-5.8S rRNA and 28S rRNA genes. Morphological analysis suggests that the apical pore complex L/W ratio could be a feature for differentiating Ostreopsis sp. 2 from the O. ovata species complex. We analyzed the toxicity and bacterial communities using liquid chromatography-mass spectrometry, and PCR-free metagenomic sequencing. Ovatoxin was detected in three of the seven strains of O. cf. ovata extracts, highlighting intraspecies variation in toxin production. Additionally, two new potential analogs of ovatoxin-a and ostreocin-A were identified. Commonly associated bacteria clades of Ostreopsis were identified from the established cultures. While some of these bacteria groups may be common to Ostreopsis (Rhodobacterales, Flavobacteria-Sphingobacteria, and Enterobacterales), it was not clear from our analysis if any one or more of these plays a role in toxin biosynthesis. Further examination of biosynthetic pathways in metagenomic data and additional experiments isolating specific bacteria from Ostreopsis would aid these efforts.
期刊介绍:
Articles deal with protists, unicellular organisms encountered free-living in various habitats or as parasites or used in basic research or applications. The European Journal of Protistology covers topics such as the structure and systematics of protists, their development, ecology, molecular biology and physiology. Beside publishing original articles the journal offers a forum for announcing scientific meetings. Reviews of recently published books are included as well. With its diversity of topics, the European Journal of Protistology is an essential source of information for every active protistologist and for biologists of various fields.