溶干酪藻Natrinema caseinicum sp.nov.,溶胶藻Natrinima glugelicum sp.nov.,海洋藻Natrineman marinum sp.nov..,从海洋环境和盐矿中分离的极嗜盐古菌。

IF 2.6 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Yao Hu, Xue Ma, Xin-Xin Li, Shun Tan, Mu Cheng, Jing Hou, Heng-Lin Cui
{"title":"溶干酪藻Natrinema caseinicum sp.nov.,溶胶藻Natrinima glugelicum sp.nov.,海洋藻Natrineman marinum sp.nov..,从海洋环境和盐矿中分离的极嗜盐古菌。","authors":"Yao Hu,&nbsp;Xue Ma,&nbsp;Xin-Xin Li,&nbsp;Shun Tan,&nbsp;Mu Cheng,&nbsp;Jing Hou,&nbsp;Heng-Lin Cui","doi":"10.1007/s00792-023-01294-3","DOIUrl":null,"url":null,"abstract":"<p><p>Four extremely halophilic archaeal strains (ZJ2<sup>T</sup>, BND6<sup>T</sup>, DT87<sup>T</sup>, and YPL30<sup>T</sup>) were isolated from marine environments and a salt mine in China. The 16S rRNA and rpoB' gene sequence similarities among strains ZJ2<sup>T</sup>, BND6<sup>T</sup>, DT87<sup>T</sup>, YPL30<sup>T</sup> and the current species of Natrinema were 93.2-99.3% and 89.2-95.8%, respectively. Both phylogenetic and phylogenomic analyses revealed that strains ZJ2<sup>T</sup>, BND6<sup>T</sup>, DT87<sup>T</sup>, and YPL30<sup>T</sup> cluster with the Natrinema members. The overall genome-related indexes (ANI, isDDH, and AAI) among these four strains and the current species of genus Natrinema were 70-88%, 22-43% and 75-89%, respectively, clearly below the threshold values for species boundary. Strains ZJ2<sup>T</sup>, BND6<sup>T</sup>, DT87<sup>T</sup>, and YPL30<sup>T</sup> could be distinguished from the related species according to differential phenotypic characteristics. The major polar lipids of the four strains were phosphatidic acid (PA), phosphatidylglycerol (PG), phosphatidylglycerol phosphate methyl ester (PGP-Me), sulfated mannosyl glucosyl diether (S-DGD-1), and disulfated mannosyl glucosyl diether (S<sub>2</sub>-DGD). The phenotypic, chemotaxonomic, phylogenetic and phylogenomic features indicated that strains ZJ2<sup>T</sup> (= CGMCC 1.18786<sup> T</sup> = JCM 34918<sup> T</sup>), BND6<sup>T</sup> (= CGMCC 1.18777<sup> T</sup> = JCM 34909<sup> T</sup>), DT87<sup>T</sup> (= CGMCC 1.18921<sup> T</sup> = JCM 35420<sup> T</sup>), and YPL30<sup>T</sup> (= CGMCC 1.15337<sup> T</sup> = JCM 31113<sup> T</sup>) represent four novel species of the genus Natrinema, for which the names, Natrinema caseinilyticum sp. nov., Natrinema gelatinilyticum sp. nov., Natrinema marinum sp. nov., and Natrinema zhouii sp. nov., are proposed.</p>","PeriodicalId":12302,"journal":{"name":"Extremophiles","volume":"27 1","pages":"9"},"PeriodicalIF":2.6000,"publicationDate":"2023-03-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"2","resultStr":"{\"title\":\"Natrinema caseinilyticum sp. nov., Natrinema gelatinilyticum sp. nov., Natrinema marinum sp. nov., Natrinema zhouii sp. nov., extremely halophilic archaea isolated from marine environments and a salt mine.\",\"authors\":\"Yao Hu,&nbsp;Xue Ma,&nbsp;Xin-Xin Li,&nbsp;Shun Tan,&nbsp;Mu Cheng,&nbsp;Jing Hou,&nbsp;Heng-Lin Cui\",\"doi\":\"10.1007/s00792-023-01294-3\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Four extremely halophilic archaeal strains (ZJ2<sup>T</sup>, BND6<sup>T</sup>, DT87<sup>T</sup>, and YPL30<sup>T</sup>) were isolated from marine environments and a salt mine in China. The 16S rRNA and rpoB' gene sequence similarities among strains ZJ2<sup>T</sup>, BND6<sup>T</sup>, DT87<sup>T</sup>, YPL30<sup>T</sup> and the current species of Natrinema were 93.2-99.3% and 89.2-95.8%, respectively. Both phylogenetic and phylogenomic analyses revealed that strains ZJ2<sup>T</sup>, BND6<sup>T</sup>, DT87<sup>T</sup>, and YPL30<sup>T</sup> cluster with the Natrinema members. The overall genome-related indexes (ANI, isDDH, and AAI) among these four strains and the current species of genus Natrinema were 70-88%, 22-43% and 75-89%, respectively, clearly below the threshold values for species boundary. Strains ZJ2<sup>T</sup>, BND6<sup>T</sup>, DT87<sup>T</sup>, and YPL30<sup>T</sup> could be distinguished from the related species according to differential phenotypic characteristics. The major polar lipids of the four strains were phosphatidic acid (PA), phosphatidylglycerol (PG), phosphatidylglycerol phosphate methyl ester (PGP-Me), sulfated mannosyl glucosyl diether (S-DGD-1), and disulfated mannosyl glucosyl diether (S<sub>2</sub>-DGD). The phenotypic, chemotaxonomic, phylogenetic and phylogenomic features indicated that strains ZJ2<sup>T</sup> (= CGMCC 1.18786<sup> T</sup> = JCM 34918<sup> T</sup>), BND6<sup>T</sup> (= CGMCC 1.18777<sup> T</sup> = JCM 34909<sup> T</sup>), DT87<sup>T</sup> (= CGMCC 1.18921<sup> T</sup> = JCM 35420<sup> T</sup>), and YPL30<sup>T</sup> (= CGMCC 1.15337<sup> T</sup> = JCM 31113<sup> T</sup>) represent four novel species of the genus Natrinema, for which the names, Natrinema caseinilyticum sp. nov., Natrinema gelatinilyticum sp. nov., Natrinema marinum sp. nov., and Natrinema zhouii sp. nov., are proposed.</p>\",\"PeriodicalId\":12302,\"journal\":{\"name\":\"Extremophiles\",\"volume\":\"27 1\",\"pages\":\"9\"},\"PeriodicalIF\":2.6000,\"publicationDate\":\"2023-03-31\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"2\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Extremophiles\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1007/s00792-023-01294-3\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Extremophiles","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1007/s00792-023-01294-3","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 2

摘要

从中国海洋环境和盐矿中分离到4株极端嗜盐古细菌(ZJ2T、BND6T、DT87T和YPL30T)。菌株ZJ2T、BND6T、DT87T、YPL30T与现种Natrinema的16S rRNA和rpoB’基因序列相似性分别为93.2 ~ 99.3%和89.2 ~ 95.8%。系统发育和系统基因组分析表明,菌株ZJ2T、BND6T、DT87T和YPL30T与Natrinema成员聚类。4个菌株与Natrinema属现有种的总体基因组相关指数ANI、isDDH和AAI分别为70 ~ 88%、22 ~ 43%和75 ~ 89%,均低于种界阈值。菌株ZJ2T、BND6T、DT87T和YPL30T根据差异表型特征可与亲缘种区分。4株菌株的主要极性脂质为磷脂酸(PA)、磷脂酰甘油(PG)、磷脂酰甘油磷酸甲酯(PGP-Me)、硫酸甘露糖基葡萄糖二醚(S-DGD-1)和硫酸甘露糖基葡萄糖二醚(S2-DGD)。chemotaxonomic表型,系统发育和phylogenomic特性表明,菌株ZJ2T (= CGMCC 1.18786 T = JCM 34918 T), BND6T (= CGMCC 1.18777 T = JCM 34909 T), DT87T (= CGMCC 1.18921 T = JCM 35420 T),和YPL30T JCM 31113 (= CGMCC 1.15337 T = T)代表四个属的新物种Natrinema,的名字,Natrinema caseinilyticum sp. 11月,Natrinema gelatinilyticum sp. 11月,Natrinema marinum sp. 11月,和Natrinema zhouii sp. 11月,建议。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Natrinema caseinilyticum sp. nov., Natrinema gelatinilyticum sp. nov., Natrinema marinum sp. nov., Natrinema zhouii sp. nov., extremely halophilic archaea isolated from marine environments and a salt mine.

Natrinema caseinilyticum sp. nov., Natrinema gelatinilyticum sp. nov., Natrinema marinum sp. nov., Natrinema zhouii sp. nov., extremely halophilic archaea isolated from marine environments and a salt mine.

Four extremely halophilic archaeal strains (ZJ2T, BND6T, DT87T, and YPL30T) were isolated from marine environments and a salt mine in China. The 16S rRNA and rpoB' gene sequence similarities among strains ZJ2T, BND6T, DT87T, YPL30T and the current species of Natrinema were 93.2-99.3% and 89.2-95.8%, respectively. Both phylogenetic and phylogenomic analyses revealed that strains ZJ2T, BND6T, DT87T, and YPL30T cluster with the Natrinema members. The overall genome-related indexes (ANI, isDDH, and AAI) among these four strains and the current species of genus Natrinema were 70-88%, 22-43% and 75-89%, respectively, clearly below the threshold values for species boundary. Strains ZJ2T, BND6T, DT87T, and YPL30T could be distinguished from the related species according to differential phenotypic characteristics. The major polar lipids of the four strains were phosphatidic acid (PA), phosphatidylglycerol (PG), phosphatidylglycerol phosphate methyl ester (PGP-Me), sulfated mannosyl glucosyl diether (S-DGD-1), and disulfated mannosyl glucosyl diether (S2-DGD). The phenotypic, chemotaxonomic, phylogenetic and phylogenomic features indicated that strains ZJ2T (= CGMCC 1.18786 T = JCM 34918 T), BND6T (= CGMCC 1.18777 T = JCM 34909 T), DT87T (= CGMCC 1.18921 T = JCM 35420 T), and YPL30T (= CGMCC 1.15337 T = JCM 31113 T) represent four novel species of the genus Natrinema, for which the names, Natrinema caseinilyticum sp. nov., Natrinema gelatinilyticum sp. nov., Natrinema marinum sp. nov., and Natrinema zhouii sp. nov., are proposed.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Extremophiles
Extremophiles 生物-生化与分子生物学
CiteScore
6.80
自引率
6.90%
发文量
28
审稿时长
2 months
期刊介绍: Extremophiles features original research articles, reviews, and method papers on the biology, molecular biology, structure, function, and applications of microbial life at high or low temperature, pressure, acidity, alkalinity, salinity, or desiccation; or in the presence of organic solvents, heavy metals, normally toxic substances, or radiation.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信