Holo-chromodulin:原生Cr3+和其他生物阳离子(Fe3+、Fe2+、Mg2+和Zn2+)争夺结合位点。

IF 2.9 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Metallomics Pub Date : 2022-10-27 DOI:10.1093/mtomcs/mfac082
Nikoleta Kircheva, Nikolai Toshev, Todor Dudev
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引用次数: 4

摘要

色素调节蛋白是一种寡肽,对胰岛素的完美功能起着至关重要的作用。虽然组成的氨基酸残基的精确序列和分子的三维结构尚未被破译,但已知的是,染色质只含有4种氨基酸,其比例为Glu-: Gly: Cys: Asp- = 4:2:2: 2。在其活性(holo-)形式下,分子完整性不可或缺的一部分是处于3+氧化态的四个铬阳离子(因此得名),位于两个金属结合位点上,分别含有一个和三个Cr3+离子。实验工作提供了一些关于金属中心结构的提示/线索,尽管它们的确切组成、类型和金属连接实体的排列仍然是谜。在目前的研究中,我们将严格遵循实验数据提供的证据,努力揭示Cr3+负载结合位点的可能结构。应用了经过校准的优化和评价吉布斯自由能的硅方法,并为可靠地破译铬调蛋白金属结合位点的组成/结构提供了强有力的前提。额外的计算表明,选择Cr3+优于其他三价(Fe3+)和二价(Fe2+, Mg2+和Zn2+)生物离子,以确保金属占据的结合位点的最大稳定性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Holo-chromodulin: competition between the native Cr3+ and other biogenic cations (Fe3+, Fe2+, Mg2+, and Zn2+) for the binding sites.

Chromodulin is an oligopeptide that has an essential role for the flawless functioning of insulin. Although the precise sequence of the constituent amino acid residues and the 3D structure of the molecule has not yet been deciphered, it is known that chromodulin contains only four amino acids in the ratio of Glu-: Gly: Cys: Asp- = 4: 2: 2: 2. An indispensable part for the integrity of the molecule in its active (holo-) form are four chromium cations (hence the name) in the oxidation state of 3+, positioned in two metal binding sites containing one and three Cr3+ ions. Experimental works provide some hints/clues concerning the structure of the metal centers, although their exact composition, type, and arrangement of metal ligating entities remain enigmatic. In the current study, we endeavor to unveil possible structure(s) of the Cr3+ loaded binding sites by strictly following the evidence provided by the experimental data. Well-calibrated in silico methodology for optimization and evaluation of Gibbs free energies is applied and gives strong premises for reliably deciphering the composition/structure of chromodulin metal binding sites. Additional computations reveal the advantage of choosing Cr3+ over other tri- (Fe3+) and divalent (Fe2+, Mg2+, and Zn2+) biogenic ions for securing maximum stability of the metal-occupied binding sites.

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来源期刊
Metallomics
Metallomics 生物-生化与分子生物学
CiteScore
7.00
自引率
5.90%
发文量
87
审稿时长
1 months
期刊介绍: Global approaches to metals in the biosciences
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