裂变酵母15个新的可绕过必需基因的鉴定。

IF 2 4区 生物学 Q4 CELL BIOLOGY
Aoi Takeda, Shigeaki Saitoh, Hiroyuki Ohkura, Kenneth E Sawin, Gohta Goshima
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引用次数: 0

摘要

每一种生物都有一套不同的对其生存至关重要的基因。这表明,在进化过程中,生物体可以通过“隐藏”替代机制的表现,在某些情况下耐受基本基因的缺失。为了系统地揭示真核细胞中的隐藏机制,我们利用分裂酵母Schizosaccharomyces pombe中缺失一个重要基因的单倍体孢子,开发了一种外基因抑制筛选方法。我们筛选了92个随机选择的基因的“旁路”致命抑制因子,这些基因对标准实验室培养条件下的生存能力至关重要。值得注意的是,基因外突变绕过了多达20个基因(22%)的必要性,其中15个以前没有报道过。一半的旁路抑制基因参与线粒体功能;我们还发现了多个调控RNA加工的基因。在出芽酵母中保守的抑制基因有18个,其中13个为非必需基因。这些趋势表明,本质绕过并非罕见事件,每个生物体都可能被赋予次要或备用机制,可以替代各种生物过程中的主要机制。此外,我们简单的基于孢子的方法的稳健性为基因组规模的筛选铺平了道路。关键词:裂糖酵母,基因外抑制因子筛选,必要性旁路(BOE), cut7(激酶-5),hul5 (E3泛素连接酶)。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Identification of 15 New Bypassable Essential Genes of Fission Yeast.

Every organism has a different set of genes essential for its viability. This indicates that an organism can become tolerant to the loss of an essential gene under certain circumstances during evolution, via the manifestation of 'masked' alternative mechanisms. In our quest to systematically uncover masked mechanisms in eukaryotic cells, we developed an extragenic suppressor screening method using haploid spores deleted of an essential gene in the fission yeast Schizosaccharomyces pombe. We screened for the 'bypass' suppressors of lethality of 92 randomly selected genes that are essential for viability in standard laboratory culture conditions. Remarkably, extragenic mutations bypassed the essentiality of as many as 20 genes (22%), 15 of which have not been previously reported. Half of the bypass-suppressible genes were involved in mitochondria function; we also identified multiple genes regulating RNA processing. 18 suppressible genes were conserved in the budding yeast Saccharomyces cerevisiae, but 13 of them were non-essential in that species. These trends suggest that essentiality bypass is not a rare event and that each organism may be endowed with secondary or backup mechanisms that can substitute for primary mechanisms in various biological processes. Furthermore, the robustness of our simple spore-based methodology paves the way for genome-scale screening.Key words: Schizosaccharomyces pombe, extragenic suppressor screening, bypass of essentiality (BOE), cut7 (kinesin-5), hul5 (E3 ubiquitin ligase).

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来源期刊
Cell structure and function
Cell structure and function 生物-细胞生物学
CiteScore
2.50
自引率
0.00%
发文量
6
审稿时长
>12 weeks
期刊介绍: Cell Structure and Function is a fully peer-reviewed, fully Open Access journal. As the official English-language journal of the Japan Society for Cell Biology, it is published continuously online and biannually in print. Cell Structure and Function publishes important, original contributions in all areas of molecular and cell biology. The journal welcomes the submission of manuscripts on research areas such as the cell nucleus, chromosomes, and gene expression; the cytoskeleton and cell motility; cell adhesion and the extracellular matrix; cell growth, differentiation and death; signal transduction; the protein life cycle; membrane traffic; and organelles.
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