探索银屑病和牙周炎的潜在并发症机制:生物信息学分析。

IF 2.7 3区 生物学
Hao Lei, Xin Chen, Ziyang Wang, Zixuan Xing, Wenqian Du, Ruimin Bai, Ke He, Wen Zhang, Yan Wang, Yan Zheng
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引用次数: 0

摘要

背景:越来越多的证据表明,银屑病(PSO)和牙周炎(PD)很可能同时发生,然而,其潜在机制仍不清楚:我们从 GEO 数据库下载了 PSO(病变与非病变,GSE30999、GSE14905)和 PD(受影响与未受影响的牙龈组织,GSE16134、GSE10334)的表达谱。首先,我们研究了 PSO 和 PD 的常见差异表达基因(DEGs)。然后,进行了GO和KEGG富集分析、蛋白质相互作用网络(PPI)构建和枢纽基因鉴定分析。最后,对枢纽基因进行了GO和KEGG富集分析、miRNA相互作用分析和转录因子(TFs)相互作用分析:结果:进一步分析发现了 18 个 DEGs,包括 15 个上调基因和 3 个下调基因。然后通过 Cytohubba 确定了 9 个中心基因,包括 IL1B、CXCL1、CXCL8、MMP12、CCL18、SELL、CXCL13、FCGR3B 和 SELE。它们的功能主要集中在两个方面:中性粒细胞趋化和迁移、趋化因子激活和相互作用。富集的信号通路包括三类:宿主防御、炎症相关信号通路和疾病相关通路。根据实验证据,在 PSO 和 PD 中进一步确定了 9 种常见的 miRNA 和 10 种常见的 TF:结论:我们的研究从生物信息学的角度初步揭示了 PSO 和 PD 的可能合并机制。结论:我们的研究从生物信息学的角度初步揭示了 PSO 和 PD 的可能合并机制,这些数据可为 PSO 和 PD 的联合预防和治疗提供新的见解,并为进一步的前瞻性研究提供数据支持。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Exploration of the underlying comorbidity mechanism in psoriasis and periodontitis: a bioinformatics analysis.

Background: Increasing evidence indicates that psoriasis (PSO) and periodontitis (PD) are likely to occur together, however, the underlying mechanism remains unclear.

Materials and methods: The expression profiles of PSO (lesion vs non-lesion, GSE30999, GSE14905) and PD (affected vs unaffected gingival tissue, GSE16134, GSE10334) were downloaded from the GEO database. First, we investigated the common differentially expressed genes (DEGs) of PSO and PD. Then, GO and KEGG enrichment analysis, protein interaction network (PPI) construction, and hub gene identification analysis were carried out. Finally, GO and KEGG enrichment analysis, miRNA interaction analysis, and transcription factors (TFs) interaction analysis for hub genes were performed.

Results: Eighteen DEGs were identified for further analysis, including 15 up-regulated genes and 3 down-regulated genes. 9 hub genes were then identified via Cytohubba, including IL1B, CXCL1, CXCL8, MMP12, CCL18, SELL, CXCL13, FCGR3B, and SELE. Their functions are mainly enriched in two aspects: neutrophil chemotaxis and migration, chemokine activation and interaction. The enriched signaling pathways includes three categories: host defense, inflammation-related signaling pathways, and disease-related pathways. 9 common miRNAs based on experimental evidence and 10 common TFs were further identified in both PSO and PD.

Conclusion: Our study revealed possible comorbidity mechanisms in PSO and PD from the perspective of bioinformatics tentatively. The data can present new insight for joint prevention and treatment of in PSO and PD, as well as provide data support for further prospective studies.

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来源期刊
Hereditas
Hereditas Biochemistry, Genetics and Molecular Biology-Genetics
CiteScore
3.80
自引率
3.70%
发文量
0
期刊介绍: For almost a century, Hereditas has published original cutting-edge research and reviews. As the Official journal of the Mendelian Society of Lund, the journal welcomes research from across all areas of genetics and genomics. Topics of interest include human and medical genetics, animal and plant genetics, microbial genetics, agriculture and bioinformatics.
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