{"title":"大规模的无网络组织可能是生物膜相变的关键","authors":"Kumar Selvarajoo","doi":"10.1049/enb.2019.0012","DOIUrl":null,"url":null,"abstract":"<div>\n <p>Non-linear Kuramoto model has been used to study synchronised or <i>sync</i> behaviour in numerous fields; however, its application in biology is scarce. Here, the basic model has been introduced and examples where large-scale small-world or scale-free networks are crucial for spontaneous <i>sync</i> have been provide even for low coupling strength. This information was next checked for relevance in living systems where it is now well known that biological networks are scale-free. A recent transcriptome-wide data analysis of a <i>Saccharomyces cerevisiae</i> biofilm showed that low- to middle-expressed genes are key for scale invariance in biology. Together, the current data indicate that a biological network connectivity structure with low coupling strength, or expression levels, is sufficient for <i>sync</i> behaviour. For biofilm regulation, it may, therefore, be necessary to investigate large-scale low-expression genes rather than small-scale high-expression genes.</p>\n </div>","PeriodicalId":72921,"journal":{"name":"Engineering biology","volume":"3 4","pages":"67-71"},"PeriodicalIF":0.0000,"publicationDate":"2019-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ietresearch.onlinelibrary.wiley.com/doi/epdf/10.1049/enb.2019.0012","citationCount":"0","resultStr":"{\"title\":\"Large-scale-free network organisation is likely key for biofilm phase transition\",\"authors\":\"Kumar Selvarajoo\",\"doi\":\"10.1049/enb.2019.0012\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div>\\n <p>Non-linear Kuramoto model has been used to study synchronised or <i>sync</i> behaviour in numerous fields; however, its application in biology is scarce. Here, the basic model has been introduced and examples where large-scale small-world or scale-free networks are crucial for spontaneous <i>sync</i> have been provide even for low coupling strength. This information was next checked for relevance in living systems where it is now well known that biological networks are scale-free. A recent transcriptome-wide data analysis of a <i>Saccharomyces cerevisiae</i> biofilm showed that low- to middle-expressed genes are key for scale invariance in biology. Together, the current data indicate that a biological network connectivity structure with low coupling strength, or expression levels, is sufficient for <i>sync</i> behaviour. For biofilm regulation, it may, therefore, be necessary to investigate large-scale low-expression genes rather than small-scale high-expression genes.</p>\\n </div>\",\"PeriodicalId\":72921,\"journal\":{\"name\":\"Engineering biology\",\"volume\":\"3 4\",\"pages\":\"67-71\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2019-09-12\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://ietresearch.onlinelibrary.wiley.com/doi/epdf/10.1049/enb.2019.0012\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Engineering biology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1049/enb.2019.0012\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Engineering biology","FirstCategoryId":"1085","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1049/enb.2019.0012","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Large-scale-free network organisation is likely key for biofilm phase transition
Non-linear Kuramoto model has been used to study synchronised or sync behaviour in numerous fields; however, its application in biology is scarce. Here, the basic model has been introduced and examples where large-scale small-world or scale-free networks are crucial for spontaneous sync have been provide even for low coupling strength. This information was next checked for relevance in living systems where it is now well known that biological networks are scale-free. A recent transcriptome-wide data analysis of a Saccharomyces cerevisiae biofilm showed that low- to middle-expressed genes are key for scale invariance in biology. Together, the current data indicate that a biological network connectivity structure with low coupling strength, or expression levels, is sufficient for sync behaviour. For biofilm regulation, it may, therefore, be necessary to investigate large-scale low-expression genes rather than small-scale high-expression genes.