Joana Pauperio, Luis Martin Gonzalez, Jesus Martinez, Marcos A González, Filipa Ms Martins, Joana Veríssimo, Pamela Puppo, Joana Pinto, Cátia Chaves, Catarina J Pinho, José Manuel Grosso-Silva, Lorenzo Quaglietta, Teresa Luísa L Silva, Pedro Sousa, Paulo Celio Alves, Nuno Fonseca, Pedro Beja, Sónia Ferreira
{"title":"InBIO 条形码倡议数据库:伊比利亚毛翅目鸟类的 DNA 条形码,记录地中海热点地区淡水生物监测的生物多样性。","authors":"Joana Pauperio, Luis Martin Gonzalez, Jesus Martinez, Marcos A González, Filipa Ms Martins, Joana Veríssimo, Pamela Puppo, Joana Pinto, Cátia Chaves, Catarina J Pinho, José Manuel Grosso-Silva, Lorenzo Quaglietta, Teresa Luísa L Silva, Pedro Sousa, Paulo Celio Alves, Nuno Fonseca, Pedro Beja, Sónia Ferreira","doi":"10.3897/BDJ.11.e97484","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>The Trichoptera are an important component of freshwater ecosystems. In the Iberian Peninsula, 380 taxa of caddisflies are known, with nearly 1/3 of the total species being endemic in the region. A reference collection of morphologically identified Trichoptera specimens, representing 142 Iberian taxa, was constructed. The InBIO Barcoding Initiative (IBI) Trichoptera 01 dataset contains records of 438 sequenced specimens. The species of this dataset correspond to about 37% of Iberian Trichoptera species diversity. Specimens were collected between 1975 and 2018 and are deposited in the IBI collection at the CIBIO (Research Center in Biodiversity and Genetic Resources, Portugal) or in the collection Marcos A. González at the University of Santiago de Compostela (Spain).</p><p><strong>New information: </strong>Twenty-nine species, from nine different families, were new additions to the Barcode of Life Data System (BOLD). A success identification rate of over 80% was achieved when comparing morphological identifications and DNA barcodes for the species analysed. This encouraging step advances incorporation of informed Environmental DNA tools in biomonitoring schemes, given the shortcomings of morphological identifications of larvae and adult Caddisflies in such studies. DNA barcoding was not successful in identifying species in six Trichoptera genera: <i>Hydropsyche</i> (Hydropsychidae), <i>Athripsodes</i> (Leptoceridae), <i>Wormaldia</i> (Philopotamidae), <i>Polycentropus</i> (Polycentropodidae) <i>Rhyacophila</i> (Rhyacophilidae) and <i>Sericostoma</i> (Sericostomatidae). The high levels of intraspecific genetic variability found, combined with a lack of a barcode gap and a challenging morphological identification, rendered these species as needing additional studies to resolve their taxonomy.</p>","PeriodicalId":12371,"journal":{"name":"Foreign Affairs","volume":"64 1","pages":"e97484"},"PeriodicalIF":6.3000,"publicationDate":"2023-01-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10848855/pdf/","citationCount":"0","resultStr":"{\"title\":\"The InBIO barcoding initiative database: DNA barcodes of Iberian Trichoptera, documenting biodiversity for freshwater biomonitoring in a Mediterranean hotspot.\",\"authors\":\"Joana Pauperio, Luis Martin Gonzalez, Jesus Martinez, Marcos A González, Filipa Ms Martins, Joana Veríssimo, Pamela Puppo, Joana Pinto, Cátia Chaves, Catarina J Pinho, José Manuel Grosso-Silva, Lorenzo Quaglietta, Teresa Luísa L Silva, Pedro Sousa, Paulo Celio Alves, Nuno Fonseca, Pedro Beja, Sónia Ferreira\",\"doi\":\"10.3897/BDJ.11.e97484\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong>The Trichoptera are an important component of freshwater ecosystems. 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引用次数: 0
摘要
背景:鞘翅目昆虫是淡水生态系统的重要组成部分。在伊比利亚半岛,已知的蝶类有 380 个类群,其中近三分之一是该地区特有的物种。伊比利亚半岛有 380 个蝶类类群,其中近 1/3 是该地区的特有物种。我们建立了一个经形态鉴定的毛翅目标本参考馆藏,代表了 142 个伊比利亚类群。InBIO Barcoding Initiative (IBI) Trichoptera 01 数据集包含 438 个测序标本的记录。该数据集中的物种约占伊比利亚毛翅目物种多样性的 37%。标本采集于 1975 年至 2018 年,保存在葡萄牙生物多样性与遗传资源研究中心(CIBIO)的 IBI 收藏馆或西班牙圣地亚哥德孔波斯特拉大学(University of Santiago de Compostela)的 Marcos A. González 收藏馆:新信息:生命条形码数据系统(BOLD)新增加了 29 个物种,分别来自 9 个不同的科。在对所分析物种的形态鉴定和 DNA 条形码进行比较时,成功鉴定率超过 80%。鉴于蝌蚪幼虫和成虫的形态鉴定在生物监测计划中的不足,这一令人鼓舞的进展推动了环境 DNA 工具在生物监测计划中的应用。DNA 条形码未能成功识别 6 个鞘翅目属中的物种:DNA条形码未能成功识别以下六个鞘翅目属中的物种:Hydropsyche(Hydropsychidae)、Athripsodes(Leptoceridae)、Wormaldia(Philopotamidae)、Polycentropus(Polycentropodidae)、Rhyacophila(Rhyacophilidae)和 Sericostoma(Sericostomatidae)。这些物种的种内遗传变异水平很高,加上缺乏条形码缺口和形态鉴定的挑战性,使得这些物种需要更多的研究来解决其分类问题。
The InBIO barcoding initiative database: DNA barcodes of Iberian Trichoptera, documenting biodiversity for freshwater biomonitoring in a Mediterranean hotspot.
Background: The Trichoptera are an important component of freshwater ecosystems. In the Iberian Peninsula, 380 taxa of caddisflies are known, with nearly 1/3 of the total species being endemic in the region. A reference collection of morphologically identified Trichoptera specimens, representing 142 Iberian taxa, was constructed. The InBIO Barcoding Initiative (IBI) Trichoptera 01 dataset contains records of 438 sequenced specimens. The species of this dataset correspond to about 37% of Iberian Trichoptera species diversity. Specimens were collected between 1975 and 2018 and are deposited in the IBI collection at the CIBIO (Research Center in Biodiversity and Genetic Resources, Portugal) or in the collection Marcos A. González at the University of Santiago de Compostela (Spain).
New information: Twenty-nine species, from nine different families, were new additions to the Barcode of Life Data System (BOLD). A success identification rate of over 80% was achieved when comparing morphological identifications and DNA barcodes for the species analysed. This encouraging step advances incorporation of informed Environmental DNA tools in biomonitoring schemes, given the shortcomings of morphological identifications of larvae and adult Caddisflies in such studies. DNA barcoding was not successful in identifying species in six Trichoptera genera: Hydropsyche (Hydropsychidae), Athripsodes (Leptoceridae), Wormaldia (Philopotamidae), Polycentropus (Polycentropodidae) Rhyacophila (Rhyacophilidae) and Sericostoma (Sericostomatidae). The high levels of intraspecific genetic variability found, combined with a lack of a barcode gap and a challenging morphological identification, rendered these species as needing additional studies to resolve their taxonomy.
期刊介绍:
Founded in 1922, Foreign Affairs is a prominent American magazine that focuses on international relations and U.S. foreign policy. It is published by the Council on Foreign Relations, an esteemed nonpartisan think tank and membership organization dedicated to analyzing U.S. foreign policy and global affairs. While the print magazine is released every two months, the website offers daily articles and publishes anthologies every other month.