N-(4-羟基苯基)吡啶酰胺的量子计算、光谱和分子对接研究

Meenakshi Singh, Mukesh Kumar, N. Singh, Shikha Sharma, Neha Agarwal, Indresh Verma, Satyavir Singh, N. Siddiqui, S. Javed
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摘要

本文主要研究了新合成的N-(4-羟基苯基)吡啶酰胺(4-HPP)的量子计算。采用密度泛函理论(DFT)进行量子计算。采用6-311++G(d,p)基集,采用B3LYP和MP2方法得到优化后的分子几何结构,为后续所有计算奠定基础。实验数据与计算得到的振动频率和核磁共振谱进行了比较。利用分子静电势面(MEP)和Fukui函数,显示了分子的电荷分布、反应区和静电势。用HOMO和LUMO之间的能差来评价4- hpp的化学活性。为了更好地理解分子间电荷转移(ICT),采用了自然键序分析(NBO)。在不同温度下,测定了吉布自由能、焓和熵等热力学参数。亲电性指数用于描述分子的生物活性,分子对接用于表示配体与蛋白质之间的相互作用。当期望其应用于医学目的时,分子的性质是由药物相似性决定的。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Quantum Computational, Spectroscopic and Molecular Docking Studies on N-(4-Hydroxyphenyl)picolinamide
In this work, the quantum computations of newly synthesized N-(4-hydroxyphenyl)picolinamide (4-HPP) is focused. Density functional theory (DFT) was used to perform the quantum calculations. The optimized molecular geometry was obtained using the B3LYP and MP2 methods employing 6-311++G(d,p) basis set, which served as the foundation for all subsequent calculations. The experimental data was compared with the calculated vibrational frequencies and NMR spectra. With the use of the molecular electrostatic potential surface (MEP) and the Fukui functions, the charge distribution, reactive regions and electrostatic potential were displayed. The chemical activity of the 4-HPP was evaluated by the energy difference between HOMO and LUMO. For better understanding of the intermolecular charge transfer (ICT), natural bond order analysis (NBO) was used. At various temperatures, thermodynamic parameters such as Gibb’s free energy, enthalpy and entropy were determined. The electrophilicity index was used to portray the molecule’s bioactivity and molecular docking was used to show the interaction between the ligand and the protein. The nature of the molecule was determined by drug similarity when expecting its application for medical purposes.
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