Nikita S. Kulishkin , Alexey V. Smirnov , David J. Patterson
{"title":"Leptomyxa属二新种(Goodey, 1915)——来自俄罗斯西北部土壤生境的Leptomyxa botanica n. sp.和Leptomyxa monrepos n. sp.。","authors":"Nikita S. Kulishkin , Alexey V. Smirnov , David J. Patterson","doi":"10.1016/j.ejop.2023.126028","DOIUrl":null,"url":null,"abstract":"<div><p>Amoebae of the genus <em>Leptomyxa</em> have variable morphologies and can only be reliably identified using molecular data. However, species distinction based on the 18S rRNA gene sequence is difficult due to the very low level of sequence divergence among morphologically different species. The database for other genes is much smaller, and genomic data on <em>Leptomyxa</em> is almost absent. In this study, we describe two new terrestrial species of the genus <em>Leptomyxa</em> isolated from Northwestern Russia, <em>Leptomyxa botanica</em> n. sp. and <em>Leptomyxa monrepos</em> n. sp. Both species easily adopt an expanded fan-shaped form and have a complex structure of the nucleolar material. Phylogenetic analyses show a derived status of these two species. They form a clade with <em>Leptomyxa valladaresi</em>. Our tree confirms that the 18S rRNA gene sequences of <em>Leptomyxa</em> species are split into two large clades. The morphological synapomorphies of these clades are not obvious. This analysis is complicated by the lack of reliable morphological data on many sequenced strains and probable misidentification of some isolates.</p></div>","PeriodicalId":1,"journal":{"name":"Accounts of Chemical Research","volume":null,"pages":null},"PeriodicalIF":16.4000,"publicationDate":"2023-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Two new species of the genus Leptomyxa (Goodey, 1915) – Leptomyxa botanica n. sp. and Leptomyxa monrepos n. sp. from the soil habitats of Northwestern Russia\",\"authors\":\"Nikita S. Kulishkin , Alexey V. Smirnov , David J. Patterson\",\"doi\":\"10.1016/j.ejop.2023.126028\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Amoebae of the genus <em>Leptomyxa</em> have variable morphologies and can only be reliably identified using molecular data. However, species distinction based on the 18S rRNA gene sequence is difficult due to the very low level of sequence divergence among morphologically different species. The database for other genes is much smaller, and genomic data on <em>Leptomyxa</em> is almost absent. In this study, we describe two new terrestrial species of the genus <em>Leptomyxa</em> isolated from Northwestern Russia, <em>Leptomyxa botanica</em> n. sp. and <em>Leptomyxa monrepos</em> n. sp. Both species easily adopt an expanded fan-shaped form and have a complex structure of the nucleolar material. Phylogenetic analyses show a derived status of these two species. They form a clade with <em>Leptomyxa valladaresi</em>. Our tree confirms that the 18S rRNA gene sequences of <em>Leptomyxa</em> species are split into two large clades. The morphological synapomorphies of these clades are not obvious. This analysis is complicated by the lack of reliable morphological data on many sequenced strains and probable misidentification of some isolates.</p></div>\",\"PeriodicalId\":1,\"journal\":{\"name\":\"Accounts of Chemical Research\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":16.4000,\"publicationDate\":\"2023-10-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Accounts of Chemical Research\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0932473923000731\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Accounts of Chemical Research","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0932473923000731","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0
摘要
Leptomyxa属的变形虫具有可变的形态,只能使用分子数据可靠地识别。然而,由于形态不同的物种之间的序列差异非常低,因此基于18S rRNA基因序列进行物种区分是困难的。其他基因的数据库要小得多,Leptomyxa的基因组数据几乎没有。本文描述了从俄罗斯西北部分离到的Leptomyxa属两个陆生新种,Leptomyxa botanica n. sp.和Leptomyxa monrepos n. sp.。这两个物种的核仁物质结构复杂,易于形成扩大的扇形结构。系统发育分析表明这两个物种具有派生的地位。它们与valladaresi形成一个分支。我们的树证实了Leptomyxa物种的18S rRNA基因序列分为两个大分支。这些分支的形态学突触不明显。由于缺乏对许多测序菌株的可靠形态学数据和可能对某些分离株的错误鉴定,这种分析变得复杂。
Two new species of the genus Leptomyxa (Goodey, 1915) – Leptomyxa botanica n. sp. and Leptomyxa monrepos n. sp. from the soil habitats of Northwestern Russia
Amoebae of the genus Leptomyxa have variable morphologies and can only be reliably identified using molecular data. However, species distinction based on the 18S rRNA gene sequence is difficult due to the very low level of sequence divergence among morphologically different species. The database for other genes is much smaller, and genomic data on Leptomyxa is almost absent. In this study, we describe two new terrestrial species of the genus Leptomyxa isolated from Northwestern Russia, Leptomyxa botanica n. sp. and Leptomyxa monrepos n. sp. Both species easily adopt an expanded fan-shaped form and have a complex structure of the nucleolar material. Phylogenetic analyses show a derived status of these two species. They form a clade with Leptomyxa valladaresi. Our tree confirms that the 18S rRNA gene sequences of Leptomyxa species are split into two large clades. The morphological synapomorphies of these clades are not obvious. This analysis is complicated by the lack of reliable morphological data on many sequenced strains and probable misidentification of some isolates.
期刊介绍:
Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance.
Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.