不同海洋纳米浮游植物分类的新型氟电化学技术

IF 2.1 3区 地球科学 Q2 LIMNOLOGY
Samuel Barton, Minjun Yang, Haotian Chen, Christopher Batchelor-McAuley, Richard G. Compton, Heather A. Bouman, Rosalind E. M. Rickaby
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引用次数: 0

摘要

为了扩大我们对海洋生态系统对环境变化响应的认识,提高浮游植物群落原位监测的时空分辨率至关重要。现有方法面临的一个关键挑战是对纳米浮游植物大小范围(2-20 μm)内的细胞进行分类和定量。当形态学存在相似性时,这尤其困难,这使得训练有素的分类学家和基于机器学习的方法都难以进行视觉区分。在这里,我们提出了一种用于分类纳米浮游植物的快速荧光电化学技术,并使用52种不同的纳米浮游植物菌株的文库,我们基于个体水平的两个测量来评估该技术的准确性:每个细胞叶绿素a荧光降低50%所需的电荷和细胞半径。我们在分类属于广泛认可的关键功能群的细胞方面证明了高度的准确性(92%);然而,当我们考虑到“纳米鞭毛虫”的更广泛的多样性时,这就减少了。值得注意的是,我们观察到一些群体,例如,钙化的等chrysidales,相对于其他类似大小的群体,对电化学驱动的氧化条件有更大的弹性,使它们更容易被技术分类。这项研究的发现为推进我们的浮游植物群落监测工具包迈出了有希望的一步。我们强调,为了提高分类精度,可以通过对设置进行最小调整来测量额外的预测变量来增强方法的未来迭代。在这样做的过程中,我们预见这种技术在纳米浮游植物大小部分的原位分类和计数方面是高度适用的,并且可能是非常宝贵的。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

A novel fluoro-electrochemical technique for classifying diverse marine nanophytoplankton

A novel fluoro-electrochemical technique for classifying diverse marine nanophytoplankton

To broaden our understanding of pelagic ecosystem responses to environmental change, it is essential that we improve the spatiotemporal resolution of in situ monitoring of phytoplankton communities. A key challenge for existing methods is in classifying and quantifying cells within the nanophytoplankton size range (2–20 μm). This is particularly difficult when there are similarities in morphology, making visual differentiation difficult for both trained taxonomists and machine learning-based approaches. Here we present a rapid fluoro-electrochemical technique for classifying nanophytoplankton, and using a library of 52 diverse strains of nanophytoplankton we assess the accuracy of this technique based on two measurements at the individual level: charge required to reduce per cell chlorophyll a fluorescence by 50% and cell radius. We demonstrate a high degree of accuracy overall (92%) in categorizing cells belonging to widely recognized key functional groups; however, this is reduced when we consider the broader diversity of “nano-phytoflagellates'.” Notably, we observe that some groups, for example, calcifying Isochrysidales, have much greater resilience to electrochemically driven oxidative conditions relative to others of a similar size, making them more easily categorized by the technique. The findings of this study present a promising step forward in advancing our toolkit for monitoring phytoplankton communities. We highlight that, for improved categorization accuracy, future iterations of the method can be enhanced by measuring additional predictor variables with minimal adjustments to the set-up. In doing so, we foresee this technique being highly applicable, and potentially invaluable, for in situ classification and enumeration of the nanophytoplankton size fraction.

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来源期刊
CiteScore
4.80
自引率
3.70%
发文量
56
审稿时长
3 months
期刊介绍: Limnology and Oceanography: Methods (ISSN 1541-5856) is a companion to ASLO''s top-rated journal Limnology and Oceanography, and articles are held to the same high standards. In order to provide the most rapid publication consistent with high standards, Limnology and Oceanography: Methods appears in electronic format only, and the entire submission and review system is online. Articles are posted as soon as they are accepted and formatted for publication. Limnology and Oceanography: Methods will consider manuscripts whose primary focus is methodological, and that deal with problems in the aquatic sciences. Manuscripts may present new measurement equipment, techniques for analyzing observations or samples, methods for understanding and interpreting information, analyses of metadata to examine the effectiveness of approaches, invited and contributed reviews and syntheses, and techniques for communicating and teaching in the aquatic sciences.
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