{"title":"利用选定频段和脑电图蒙太奇进行癫痫发作分类:一种自然语言处理方法。","authors":"Ziwei Wang, Paolo Mengoni","doi":"10.1186/s40708-022-00159-3","DOIUrl":null,"url":null,"abstract":"<p><p>Individualized treatment is crucial for epileptic patients with different types of seizures. The differences among patients impact the drug choice as well as the surgery procedure. With the advance in machine learning, automatic seizure detection can ease the manual time-consuming and labor-intensive procedure for diagnose seizure in the clinical setting. In this paper, we present an electroencephalography (EEG) frequency bands (sub-bands) and montages selection (sub-zones) method for classifier training that exploits Natural Language Processing from individual patients' clinical report. The proposed approach is targeting for individualized treatment. We integrated the prior knowledge from patient's reports into the classifier-building process, mimicking the authentic thinking process of experienced neurologist's when diagnosing seizure using EEG. The keywords from clinical documents are mapped to the EEG data in terms of frequency bands and scalp EEG electrodes. The data of experiments are from the Temple University Hospital EEG seizure corpus, and the dataset is divided based on each group of patients with same seizure type and same recording electrode references. The classifier includes Random Forest, Support Vector Machine and Multi-Layer Perceptron. The classification performance indicates that competitive results can be achieve with a small portion of EEG the data. Using the sub-zones selection for Generalized Seizures (GNSZ) on all three electrodes, data are reduced by nearly 50% while the performance metrics remain at the same level with the whole frequency and zones. Moreover, when selecting by sub-zones and sub-bands together for GNSZ with Linked Ears reference, the data range reduced to 0.3% of whole range, and the performance deviates less than 3% from the results with whole range of data. Results show that using proposed approach may lead to more efficient implementations of the seizure classifier to be executed on power-efficient devices for long lasting real-time seizures detection.</p>","PeriodicalId":8859,"journal":{"name":"Biology of the Cell","volume":"91 1","pages":"11"},"PeriodicalIF":2.4000,"publicationDate":"2022-05-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9142724/pdf/","citationCount":"0","resultStr":"{\"title\":\"Seizure classification with selected frequency bands and EEG montages: a Natural Language Processing approach.\",\"authors\":\"Ziwei Wang, Paolo Mengoni\",\"doi\":\"10.1186/s40708-022-00159-3\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Individualized treatment is crucial for epileptic patients with different types of seizures. The differences among patients impact the drug choice as well as the surgery procedure. 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The data of experiments are from the Temple University Hospital EEG seizure corpus, and the dataset is divided based on each group of patients with same seizure type and same recording electrode references. The classifier includes Random Forest, Support Vector Machine and Multi-Layer Perceptron. The classification performance indicates that competitive results can be achieve with a small portion of EEG the data. Using the sub-zones selection for Generalized Seizures (GNSZ) on all three electrodes, data are reduced by nearly 50% while the performance metrics remain at the same level with the whole frequency and zones. Moreover, when selecting by sub-zones and sub-bands together for GNSZ with Linked Ears reference, the data range reduced to 0.3% of whole range, and the performance deviates less than 3% from the results with whole range of data. 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引用次数: 0
摘要
对于不同类型的癫痫患者来说,个性化治疗至关重要。患者之间的差异会影响药物选择和手术过程。随着机器学习的发展,自动癫痫发作检测可以减轻临床上诊断癫痫发作的人工耗时耗力的过程。在本文中,我们提出了一种用于分类器训练的脑电图(EEG)频带(子带)和蒙太奇选择(子区)方法,该方法利用了自然语言处理技术(Natural Language Processing)来处理患者的临床报告。所提出的方法以个体化治疗为目标。我们将患者报告中的先验知识整合到分类器构建过程中,模仿经验丰富的神经科医生在使用脑电图诊断癫痫发作时的真实思维过程。临床文件中的关键词与脑电图数据的频段和头皮脑电图电极进行了映射。实验数据来自天普大学医院脑电图癫痫发作语料库,数据集根据每组具有相同发作类型和相同记录电极参考的患者进行划分。分类器包括随机森林、支持向量机和多层感知器。分类结果表明,只需使用一小部分脑电图数据就能获得有竞争力的结果。在所有三个电极上使用泛化癫痫发作(GNSZ)的子区选择,数据减少了近 50%,而性能指标与整个频率和区保持在同一水平。此外,在使用联结耳(Linked Ears)参考对 GNSZ 进行子区和子频带选择时,数据范围减少到整个范围的 0.3%,性能与整个范围数据的结果偏差不到 3%。结果表明,使用建议的方法可以更高效地实现癫痫发作分类器,并在高能效设备上执行,从而实现长时间的实时癫痫发作检测。
Seizure classification with selected frequency bands and EEG montages: a Natural Language Processing approach.
Individualized treatment is crucial for epileptic patients with different types of seizures. The differences among patients impact the drug choice as well as the surgery procedure. With the advance in machine learning, automatic seizure detection can ease the manual time-consuming and labor-intensive procedure for diagnose seizure in the clinical setting. In this paper, we present an electroencephalography (EEG) frequency bands (sub-bands) and montages selection (sub-zones) method for classifier training that exploits Natural Language Processing from individual patients' clinical report. The proposed approach is targeting for individualized treatment. We integrated the prior knowledge from patient's reports into the classifier-building process, mimicking the authentic thinking process of experienced neurologist's when diagnosing seizure using EEG. The keywords from clinical documents are mapped to the EEG data in terms of frequency bands and scalp EEG electrodes. The data of experiments are from the Temple University Hospital EEG seizure corpus, and the dataset is divided based on each group of patients with same seizure type and same recording electrode references. The classifier includes Random Forest, Support Vector Machine and Multi-Layer Perceptron. The classification performance indicates that competitive results can be achieve with a small portion of EEG the data. Using the sub-zones selection for Generalized Seizures (GNSZ) on all three electrodes, data are reduced by nearly 50% while the performance metrics remain at the same level with the whole frequency and zones. Moreover, when selecting by sub-zones and sub-bands together for GNSZ with Linked Ears reference, the data range reduced to 0.3% of whole range, and the performance deviates less than 3% from the results with whole range of data. Results show that using proposed approach may lead to more efficient implementations of the seizure classifier to be executed on power-efficient devices for long lasting real-time seizures detection.
期刊介绍:
The journal publishes original research articles and reviews on all aspects of cellular, molecular and structural biology, developmental biology, cell physiology and evolution. It will publish articles or reviews contributing to the understanding of the elementary biochemical and biophysical principles of live matter organization from the molecular, cellular and tissues scales and organisms.
This includes contributions directed towards understanding biochemical and biophysical mechanisms, structure-function relationships with respect to basic cell and tissue functions, development, development/evolution relationship, morphogenesis, stem cell biology, cell biology of disease, plant cell biology, as well as contributions directed toward understanding integrated processes at the organelles, cell and tissue levels. Contributions using approaches such as high resolution imaging, live imaging, quantitative cell biology and integrated biology; as well as those using innovative genetic and epigenetic technologies, ex-vivo tissue engineering, cellular, tissue and integrated functional analysis, and quantitative biology and modeling to demonstrate original biological principles are encouraged.