{"title":"圣诞历史中外枝长度的分布","authors":"F. Disanto, Michael Fuchs","doi":"10.37236/11438","DOIUrl":null,"url":null,"abstract":"The Yule branching process is a classical model for the random generation of gene tree topologies in population genetics. It generates binary ranked trees -also called histories- with a finite number $n$ of leaves. We study the lengths $\\ell_1 > \\ell_2 > \\cdots > \\ell_k > \\cdots$ of the external branches of a Yule generated random history of size $n$, where the length of an external branch is defined as the rank of its parent node. When $n \\rightarrow \\infty$, we show that the random variable $\\ell_k$, once rescaled as $\\frac{n-\\ell_k}{\\sqrt{n/2}}$, follows a $\\chi$-distribution with $2k$ degrees of freedom, with mean $\\mathbb E(\\ell_k) \\sim n$ and variance $\\mathbb V(\\ell_k) \\sim n \\big(k-\\frac{\\pi k^2}{16^k} \\binom{2k}{k}^2\\big)$. Our results contribute to the study of the combinatorial features of Yule generated gene trees, in which external branches are associated with singleton mutations affecting individual gene copies.","PeriodicalId":11515,"journal":{"name":"Electronic Journal of Combinatorics","volume":"224 ","pages":""},"PeriodicalIF":0.7000,"publicationDate":"2023-08-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Distribution of External Branch Lengths in Yule Histories\",\"authors\":\"F. Disanto, Michael Fuchs\",\"doi\":\"10.37236/11438\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The Yule branching process is a classical model for the random generation of gene tree topologies in population genetics. It generates binary ranked trees -also called histories- with a finite number $n$ of leaves. We study the lengths $\\\\ell_1 > \\\\ell_2 > \\\\cdots > \\\\ell_k > \\\\cdots$ of the external branches of a Yule generated random history of size $n$, where the length of an external branch is defined as the rank of its parent node. When $n \\\\rightarrow \\\\infty$, we show that the random variable $\\\\ell_k$, once rescaled as $\\\\frac{n-\\\\ell_k}{\\\\sqrt{n/2}}$, follows a $\\\\chi$-distribution with $2k$ degrees of freedom, with mean $\\\\mathbb E(\\\\ell_k) \\\\sim n$ and variance $\\\\mathbb V(\\\\ell_k) \\\\sim n \\\\big(k-\\\\frac{\\\\pi k^2}{16^k} \\\\binom{2k}{k}^2\\\\big)$. Our results contribute to the study of the combinatorial features of Yule generated gene trees, in which external branches are associated with singleton mutations affecting individual gene copies.\",\"PeriodicalId\":11515,\"journal\":{\"name\":\"Electronic Journal of Combinatorics\",\"volume\":\"224 \",\"pages\":\"\"},\"PeriodicalIF\":0.7000,\"publicationDate\":\"2023-08-25\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Electronic Journal of Combinatorics\",\"FirstCategoryId\":\"100\",\"ListUrlMain\":\"https://doi.org/10.37236/11438\",\"RegionNum\":4,\"RegionCategory\":\"数学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MATHEMATICS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Electronic Journal of Combinatorics","FirstCategoryId":"100","ListUrlMain":"https://doi.org/10.37236/11438","RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATHEMATICS","Score":null,"Total":0}
Distribution of External Branch Lengths in Yule Histories
The Yule branching process is a classical model for the random generation of gene tree topologies in population genetics. It generates binary ranked trees -also called histories- with a finite number $n$ of leaves. We study the lengths $\ell_1 > \ell_2 > \cdots > \ell_k > \cdots$ of the external branches of a Yule generated random history of size $n$, where the length of an external branch is defined as the rank of its parent node. When $n \rightarrow \infty$, we show that the random variable $\ell_k$, once rescaled as $\frac{n-\ell_k}{\sqrt{n/2}}$, follows a $\chi$-distribution with $2k$ degrees of freedom, with mean $\mathbb E(\ell_k) \sim n$ and variance $\mathbb V(\ell_k) \sim n \big(k-\frac{\pi k^2}{16^k} \binom{2k}{k}^2\big)$. Our results contribute to the study of the combinatorial features of Yule generated gene trees, in which external branches are associated with singleton mutations affecting individual gene copies.
期刊介绍:
The Electronic Journal of Combinatorics (E-JC) is a fully-refereed electronic journal with very high standards, publishing papers of substantial content and interest in all branches of discrete mathematics, including combinatorics, graph theory, and algorithms for combinatorial problems.