东亚海星Asterias amurensis(棘皮动物纲:小行星亚目)线粒体基因组的特征和比较。

Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis Pub Date : 2021-07-01 Epub Date: 2023-11-28
Yanzhen Du, Kangkang Han, Xiaoqi Zeng, Gang Ni
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引用次数: 0

摘要

海星Asterias amurensis是一种原产于西北太平洋的海洋害虫,已成功入侵澳大利亚南部。紫苏在本土和非本土地区都造成了巨大的环境和经济影响。然而,关于其本地种群的遗传特征,特别是对于华北地区的种群,信息很少。在这里,我们对来自中国不同地区的五个个体的完整线粒体基因组进行了测序,并将它们的特征与日本的三个线粒体基因组进行比较。多项分析和比较显示,八个有丝分裂基因组的基因组成、基因顺序、密码子使用和核苷酸含量差异不大。然而,种内系统发育重建揭示了来自中国北部加Ushimado(日本濑户内海)和日本北部(Asamushi和Onagawa)的标本之间的两个不同谱系。这一结论得到了成对遗传距离分析的支持,该分析表明,来自不同谱系的个体具有相对较高的值(均高于2%)。根据对西北太平洋古环境和构造活动的了解,这两个谱系可能起源于上新世早期,因为当时东海与日本海/东海隔绝,而这些谱系的现代分布可能受到洋流系统的影响。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Characterization and comparison of the mitochondrial genomes of the sea star Asterias amurensis (Echinodermata: Asteroidea) in East Asia.

The starfish Asterias amurensis is a marine pest native to the northwestern Pacific and has successfully invaded southern Australia. Asterias amurensis have caused substantial environmental and economic impacts in both native and non-native regions. However, little information is available about the genetic features of its native populations, especially for those in North China. Here we sequenced the complete mitochondrial genomes of five individuals from different locations in China and compared their characteristics with three mitogenomes available from Japan. Multiple analyses and comparisons revealed little difference in the gene composition, gene order, codon usage, and nucleotide content among the eight mitogenomes. However, intraspecific phylogenetic reconstruction unveiled two divergent lineages between specimens from North China plus Ushimado (Seto Inland Sea, Japan) and northern Japan (Asamushi and Onagawa). This conclusion was backed by an analysis of pairwise genetic distances, which showed that individuals from different lineages had relatively higher values (all above 2%). Based on knowledge of paleoenvironmental and tectonic activity in the northwestern Pacific, the two lineages might have originated during the Early Pliocene due to the isolation of the East China Sea from the Japan Sea/East Sea during that time, while the present-day distribution of these lineages have likely been influenced by the ocean current system.

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