三种Anurans嗅觉受体基因库的多样性和染色体分布的追踪。

IF 2.1 3区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Journal of Molecular Evolution Pub Date : 2023-12-01 Epub Date: 2023-10-31 DOI:10.1007/s00239-023-10135-y
Johnny Sousa Ferreira, Daniel Pacheco Bruschi
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引用次数: 0

摘要

嗅觉是大多数脊椎动物的关键能力,通过鼻腔中的嗅觉受体实现。嗅觉受体的巨大多样性是由基因复制创造的,遵循着出生和死亡的进化模式。到目前为止,两栖动物的嗅觉受体基因相对较少受到关注,尽管最近的研究增加了可获得数据的物种数量。本研究分析了三个无核种(脓疱蟾蜍、蟾蜍和薄膜壳虫)OR基因的多样性和染色体分布。OR基因是通过搜索同源性、使用生物信息学工具和脚本进行序列过滤和比对来识别的。在这三个物种中都发现了高度多样性的OR基因,从蟾蜍的917个到博埃特格里的1194个,在脓疱乳杆菌中总共发现了2076个OR基因。使用进化基因树分析识别出六个OR组。虽然脓疱蟾蜍的γ组基因(检测空气中的气味)是迄今为止在无尾蟾蜍中记录的数量最多的基因之一,但蟾蜍的假基因序列数量是有史以来最少的,在β组或ε组中都没有假基因。尽管H.boettgeri与非洲爪蟾有许多对水生生活方式的形态学适应,并且呈现出与检测水溶性气味相关的相似数量的基因,但与检测空气中气味相关的基因相对较少。这项研究首次描述了三个研究物种的完整OR库,对理解脊椎动物嗅觉的进化和功能做出了重要贡献。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Tracking the Diversity and Chromosomal Distribution of the Olfactory Receptor Gene Repertoires of Three Anurans Species.

Tracking the Diversity and Chromosomal Distribution of the Olfactory Receptor Gene Repertoires of Three Anurans Species.

Olfaction is a crucial capability for most vertebrates and is realized through olfactory receptors in the nasal cavity. The enormous diversity of olfactory receptors has been created by gene duplication, following a birth-and-death model of evolution. The olfactory receptor genes of the amphibians have received relatively little attention up to now, although recent studies have increased the number of species for which data are available. This study analyzed the diversity and chromosomal distribution of the OR genes of three anuran species (Engystomops pustulosus, Bufo bufo and Hymenochirus boettgeri). The OR genes were identified through searches for homologies, and sequence filtering and alignment using bioinformatic tools and scripts. A high diversity of OR genes was found in all three species, ranging from 917 in B. bufo to 1194 in H. boettgeri, and a total of 2076 OR genes in E. pustulosus. Six OR groups were recognized using an evolutionary gene tree analysis. While E. pustulosus has one of the highest numbers of genes of the gamma group (which detect airborne odorants) yet recorded in an anuran, B. bufo presented the smallest number of pseudogene sequences ever identified, with no pseudogenes in either the beta or epsilon groups. Although H. boettgeri shares many morphological adaptations for an aquatic lifestyle with Xenopus, and presented a similar number of genes related to the detection of water-soluble odorants, it had comparatively far fewer genes related to the detection of airborne odorants. This study is the first to describe the complete OR repertoire of the three study species and represents an important contribution to the understanding of the evolution and function of the sense of smell in vertebrates.

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来源期刊
Journal of Molecular Evolution
Journal of Molecular Evolution 生物-进化生物学
CiteScore
5.50
自引率
2.60%
发文量
36
审稿时长
3 months
期刊介绍: Journal of Molecular Evolution covers experimental, computational, and theoretical work aimed at deciphering features of molecular evolution and the processes bearing on these features, from the initial formation of macromolecular systems through their evolution at the molecular level, the co-evolution of their functions in cellular and organismal systems, and their influence on organismal adaptation, speciation, and ecology. Topics addressed include the evolution of informational macromolecules and their relation to more complex levels of biological organization, including populations and taxa, as well as the molecular basis for the evolution of ecological interactions of species and the use of molecular data to infer fundamental processes in evolutionary ecology. This coverage accommodates such subfields as new genome sequences, comparative structural and functional genomics, population genetics, the molecular evolution of development, the evolution of gene regulation and gene interaction networks, and in vitro evolution of DNA and RNA, molecular evolutionary ecology, and the development of methods and theory that enable molecular evolutionary inference, including but not limited to, phylogenetic methods.
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