硬骨鱼Pethia stoliczkana线粒体全基因组序列结构分析及系统发育关系

IF 0.5 4区 生物学 Q4 ZOOLOGY
Z. Qiao
{"title":"硬骨鱼Pethia stoliczkana线粒体全基因组序列结构分析及系统发育关系","authors":"Z. Qiao","doi":"10.17582/journal.pjz/20230302100304","DOIUrl":null,"url":null,"abstract":"In this study, the whole mitochondrial genome sequence of Pethia stoliczkana was obtained using high-throughput sequencing technology, and its structure and characteristics were analyzed. The P. stoliczkana mitochondrial genome contained a total of 16,966 base pairs, including 13 protein-coding genes, 22 transport RNA genes, two ribosomal RNA genes, and one control region. The A+T content (59.7%) of the whole mitochondrial genome was greater than the G+C content (40.3%), indicating an obvious A+T preference. The mitochondrial genome of P. stoliczkana is similar to that of most teleost fish, and no gene rearrangements were detected. The phylogenetic relationship tree of Smiliogastrinae fish was constructed based on 13 protein-coding genes using the Bayesian inference and maximum likelihood methods. We found that P. stoliczkana was closely related to Pethia ticto and Pethia padamya . These results enrich the mitochondrial genome database of Smiliogastrinae fish and provide reference materials for systematic classification of this group of fish.","PeriodicalId":19975,"journal":{"name":"Pakistan Journal of Zoology","volume":null,"pages":null},"PeriodicalIF":0.5000,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Structural Analysis and Phylogenetic Relationships of a Teleost Fish, Pethia stoliczkana Based on the Complete Mitochondrial Genome Sequence\",\"authors\":\"Z. Qiao\",\"doi\":\"10.17582/journal.pjz/20230302100304\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"In this study, the whole mitochondrial genome sequence of Pethia stoliczkana was obtained using high-throughput sequencing technology, and its structure and characteristics were analyzed. The P. stoliczkana mitochondrial genome contained a total of 16,966 base pairs, including 13 protein-coding genes, 22 transport RNA genes, two ribosomal RNA genes, and one control region. The A+T content (59.7%) of the whole mitochondrial genome was greater than the G+C content (40.3%), indicating an obvious A+T preference. The mitochondrial genome of P. stoliczkana is similar to that of most teleost fish, and no gene rearrangements were detected. The phylogenetic relationship tree of Smiliogastrinae fish was constructed based on 13 protein-coding genes using the Bayesian inference and maximum likelihood methods. We found that P. stoliczkana was closely related to Pethia ticto and Pethia padamya . These results enrich the mitochondrial genome database of Smiliogastrinae fish and provide reference materials for systematic classification of this group of fish.\",\"PeriodicalId\":19975,\"journal\":{\"name\":\"Pakistan Journal of Zoology\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.5000,\"publicationDate\":\"2023-01-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Pakistan Journal of Zoology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.17582/journal.pjz/20230302100304\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"ZOOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Pakistan Journal of Zoology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.17582/journal.pjz/20230302100304","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"ZOOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

本研究利用高通量测序技术获得了Pethia stoliczkana线粒体全基因组序列,并对其结构和特征进行了分析。stoliczkana线粒体基因组共包含16966个碱基对,包括13个蛋白质编码基因、22个转运RNA基因、2个核糖体RNA基因和1个控制区。线粒体全基因组A+T含量(59.7%)大于G+C含量(40.3%),具有明显的A+T偏好。P. stoliczkana的线粒体基因组与大多数硬骨鱼相似,未发现基因重排。基于13个蛋白质编码基因,采用贝叶斯推理和极大似然方法构建了笑腹鱼的系统发育关系树。结果表明,该属植物与皮苔(Pethia ticto)和皮苔(Pethia padamya)亲缘关系较近。这些结果丰富了笑脸鱼线粒体基因组数据库,为该鱼类的系统分类提供参考资料。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Structural Analysis and Phylogenetic Relationships of a Teleost Fish, Pethia stoliczkana Based on the Complete Mitochondrial Genome Sequence
In this study, the whole mitochondrial genome sequence of Pethia stoliczkana was obtained using high-throughput sequencing technology, and its structure and characteristics were analyzed. The P. stoliczkana mitochondrial genome contained a total of 16,966 base pairs, including 13 protein-coding genes, 22 transport RNA genes, two ribosomal RNA genes, and one control region. The A+T content (59.7%) of the whole mitochondrial genome was greater than the G+C content (40.3%), indicating an obvious A+T preference. The mitochondrial genome of P. stoliczkana is similar to that of most teleost fish, and no gene rearrangements were detected. The phylogenetic relationship tree of Smiliogastrinae fish was constructed based on 13 protein-coding genes using the Bayesian inference and maximum likelihood methods. We found that P. stoliczkana was closely related to Pethia ticto and Pethia padamya . These results enrich the mitochondrial genome database of Smiliogastrinae fish and provide reference materials for systematic classification of this group of fish.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Pakistan Journal of Zoology
Pakistan Journal of Zoology 生物-动物学
CiteScore
1.10
自引率
16.70%
发文量
306
审稿时长
4.5 months
期刊介绍: Pakistan Journal of Zoology (Pakistan J. Zool.) publishes original articles in English on all aspects of animal life. Generally these articles will be in, or related to one of the following subject areas: Physiology, Cell Biology, Molecular Biology, Genetics, Bioinformatics, Toxicology, Forensic Science, Developmental Biology, Entomology, Parasitology, Microbiology, Biotechnology, Pathology, Palaeontology. Taxonomy, Environmental Biology, Wildlife, Fisheries, Vertebrate and Invertebrate Morphology. Additionally, the journal considers research on health and clinical studies. Short communications are regularly considered, however, uninvited review articles, first records/reports of known species, case reports/studies and survey reports are not published in Pakistan Journal of Zoology.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信