Guo Yue, Yu Liang Cao, Dong Ying, Zhou Hongchang, Shang Ya Qian, Zhang De Long, Chen Gao Qiang, Jiang Bei, Wu Wan Ting, Lu Mingke
{"title":"广州管圆线虫雄性成虫的转录组分析。","authors":"Guo Yue, Yu Liang Cao, Dong Ying, Zhou Hongchang, Shang Ya Qian, Zhang De Long, Chen Gao Qiang, Jiang Bei, Wu Wan Ting, Lu Mingke","doi":"10.18502/ijpa.v18i3.13761","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>The pathogen of angiostrongyliasis is the parasite <i>Angiostrongylus cantonensis,</i> and the transcriptome profiling of the male adult was unclear. We aimed to understand how the male adults adapt, so the expression profile of <i>A. cantonensis</i> adult males was analyzed.</p><p><strong>Methods: </strong>In order to improve the understanding of the transcriptome of adult males, RNA from three groups of male adult <i>A. cantonensis</i> was extracted and reverse transcribed to construct cDNA libraries. After sequencing, annotation of unigenes and transcripts was performed by querying the NR (Non-Redundant Protein Sequence Database), GO (Gene Ontology) and COG/KOG (Clusters of Orthologous Groups of proteins/euKaryotic Ortholog Groups) databases.</p><p><strong>Results: </strong>For each group of adults, 43,260,894 raw reads and 43,200,341 clean reads were obtained. After successful assembly, 87,649 unigenes and 146,895 transcripts were obtained. Annotation of the unigenes and transcripts was identical and male adults expressed a series of genes encoding proteins specific to the male gender at the adult stage, such as proteins involved in energy metabolism, energy synthesis and transport. Expression of the ribosome pathway suggests a relationship with the physical activities during the adult male stage.</p><p><strong>Conclusion: </strong>The transcriptome analysis is a good reference to understand further the expression profile of male adult <i>A. cantonensis</i>.</p>","PeriodicalId":14669,"journal":{"name":"Iranian Journal of Parasitology","volume":"18 3","pages":"382-389"},"PeriodicalIF":0.9000,"publicationDate":"2023-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/1b/2a/IJPA-18-382.PMC10597880.pdf","citationCount":"0","resultStr":"{\"title\":\"Transcriptome Profiling of Male Adult <i>Angiostrongylus cantonensis</i>.\",\"authors\":\"Guo Yue, Yu Liang Cao, Dong Ying, Zhou Hongchang, Shang Ya Qian, Zhang De Long, Chen Gao Qiang, Jiang Bei, Wu Wan Ting, Lu Mingke\",\"doi\":\"10.18502/ijpa.v18i3.13761\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong>The pathogen of angiostrongyliasis is the parasite <i>Angiostrongylus cantonensis,</i> and the transcriptome profiling of the male adult was unclear. We aimed to understand how the male adults adapt, so the expression profile of <i>A. cantonensis</i> adult males was analyzed.</p><p><strong>Methods: </strong>In order to improve the understanding of the transcriptome of adult males, RNA from three groups of male adult <i>A. cantonensis</i> was extracted and reverse transcribed to construct cDNA libraries. After sequencing, annotation of unigenes and transcripts was performed by querying the NR (Non-Redundant Protein Sequence Database), GO (Gene Ontology) and COG/KOG (Clusters of Orthologous Groups of proteins/euKaryotic Ortholog Groups) databases.</p><p><strong>Results: </strong>For each group of adults, 43,260,894 raw reads and 43,200,341 clean reads were obtained. After successful assembly, 87,649 unigenes and 146,895 transcripts were obtained. Annotation of the unigenes and transcripts was identical and male adults expressed a series of genes encoding proteins specific to the male gender at the adult stage, such as proteins involved in energy metabolism, energy synthesis and transport. Expression of the ribosome pathway suggests a relationship with the physical activities during the adult male stage.</p><p><strong>Conclusion: </strong>The transcriptome analysis is a good reference to understand further the expression profile of male adult <i>A. cantonensis</i>.</p>\",\"PeriodicalId\":14669,\"journal\":{\"name\":\"Iranian Journal of Parasitology\",\"volume\":\"18 3\",\"pages\":\"382-389\"},\"PeriodicalIF\":0.9000,\"publicationDate\":\"2023-07-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/1b/2a/IJPA-18-382.PMC10597880.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Iranian Journal of Parasitology\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.18502/ijpa.v18i3.13761\",\"RegionNum\":4,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"PARASITOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Iranian Journal of Parasitology","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.18502/ijpa.v18i3.13761","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"PARASITOLOGY","Score":null,"Total":0}
Transcriptome Profiling of Male Adult Angiostrongylus cantonensis.
Background: The pathogen of angiostrongyliasis is the parasite Angiostrongylus cantonensis, and the transcriptome profiling of the male adult was unclear. We aimed to understand how the male adults adapt, so the expression profile of A. cantonensis adult males was analyzed.
Methods: In order to improve the understanding of the transcriptome of adult males, RNA from three groups of male adult A. cantonensis was extracted and reverse transcribed to construct cDNA libraries. After sequencing, annotation of unigenes and transcripts was performed by querying the NR (Non-Redundant Protein Sequence Database), GO (Gene Ontology) and COG/KOG (Clusters of Orthologous Groups of proteins/euKaryotic Ortholog Groups) databases.
Results: For each group of adults, 43,260,894 raw reads and 43,200,341 clean reads were obtained. After successful assembly, 87,649 unigenes and 146,895 transcripts were obtained. Annotation of the unigenes and transcripts was identical and male adults expressed a series of genes encoding proteins specific to the male gender at the adult stage, such as proteins involved in energy metabolism, energy synthesis and transport. Expression of the ribosome pathway suggests a relationship with the physical activities during the adult male stage.
Conclusion: The transcriptome analysis is a good reference to understand further the expression profile of male adult A. cantonensis.
期刊介绍:
Iranian Journal of Parasitology (IJP) is the official publication of Iranian Society of Parasitology (ISP) launched in 2006. The society was inaugurated in 1994 and pursues the improvement of the knowledge on the parasites and parasitic diseases, exchange of scientific knowledge with foreign societies, publicity activities, and consultation on the parasitic diseases, and intimate relationship among society members.
The main aims of the Journal are: contribution to the field of Parasitology, including all aspects of parasites and parasitic diseases (medical and veterinary) and related fields such as Entomology which may be submitted by scientists from Iran and all over the world.