Saleem Ur Rahman, Leslie L. Domier, Ghulam Raza, Nasim Ahmed, Nancy K. McCoppin, Imran Amin, Shahid Mansoor
{"title":"鉴定巴基斯坦大豆病毒的宏基因组研究","authors":"Saleem Ur Rahman, Leslie L. Domier, Ghulam Raza, Nasim Ahmed, Nancy K. McCoppin, Imran Amin, Shahid Mansoor","doi":"10.1007/s13313-023-00909-9","DOIUrl":null,"url":null,"abstract":"<div><p>In 2018, symptoms of multiple viruses were observed in a soybean field at Faisalabad, Pakistan. Symptomatic and asymptomatic leaf samples were collected, RNA was extracted, and cDNA was synthesized and characterized using high throughput RNA sequencing (RNAseq). The RNAseq results showed the presence of three strains of cowpea mild mottle virus, an RNA virus in the <i>Carlavirus</i> genus in the family <i>Betaflexiviridae</i>. Eight contigs of a putative member of the genus <i>Torradovirus</i> in the family <i>Secoviridae</i> were also observed, which was named soybean torradovirus-1. Multiple DNA viruses of the genus <i>Begomovirus</i> were also identified. These included mungbean yellow mosaic India virus, mungbean yellow mosaic virus and pedilanthus leaf curl virus. Among the RNA and DNA viruses, cowpea mild mottle virus and mungbean yellow mosaic virus were the most abundant.</p></div>","PeriodicalId":8598,"journal":{"name":"Australasian Plant Pathology","volume":null,"pages":null},"PeriodicalIF":0.9000,"publicationDate":"2023-04-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":"{\"title\":\"Metagenomic study for the identification of viruses infecting soybean in Pakistan\",\"authors\":\"Saleem Ur Rahman, Leslie L. Domier, Ghulam Raza, Nasim Ahmed, Nancy K. McCoppin, Imran Amin, Shahid Mansoor\",\"doi\":\"10.1007/s13313-023-00909-9\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>In 2018, symptoms of multiple viruses were observed in a soybean field at Faisalabad, Pakistan. Symptomatic and asymptomatic leaf samples were collected, RNA was extracted, and cDNA was synthesized and characterized using high throughput RNA sequencing (RNAseq). The RNAseq results showed the presence of three strains of cowpea mild mottle virus, an RNA virus in the <i>Carlavirus</i> genus in the family <i>Betaflexiviridae</i>. Eight contigs of a putative member of the genus <i>Torradovirus</i> in the family <i>Secoviridae</i> were also observed, which was named soybean torradovirus-1. Multiple DNA viruses of the genus <i>Begomovirus</i> were also identified. These included mungbean yellow mosaic India virus, mungbean yellow mosaic virus and pedilanthus leaf curl virus. Among the RNA and DNA viruses, cowpea mild mottle virus and mungbean yellow mosaic virus were the most abundant.</p></div>\",\"PeriodicalId\":8598,\"journal\":{\"name\":\"Australasian Plant Pathology\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.9000,\"publicationDate\":\"2023-04-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Australasian Plant Pathology\",\"FirstCategoryId\":\"97\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s13313-023-00909-9\",\"RegionNum\":4,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"PLANT SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Australasian Plant Pathology","FirstCategoryId":"97","ListUrlMain":"https://link.springer.com/article/10.1007/s13313-023-00909-9","RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"PLANT SCIENCES","Score":null,"Total":0}
Metagenomic study for the identification of viruses infecting soybean in Pakistan
In 2018, symptoms of multiple viruses were observed in a soybean field at Faisalabad, Pakistan. Symptomatic and asymptomatic leaf samples were collected, RNA was extracted, and cDNA was synthesized and characterized using high throughput RNA sequencing (RNAseq). The RNAseq results showed the presence of three strains of cowpea mild mottle virus, an RNA virus in the Carlavirus genus in the family Betaflexiviridae. Eight contigs of a putative member of the genus Torradovirus in the family Secoviridae were also observed, which was named soybean torradovirus-1. Multiple DNA viruses of the genus Begomovirus were also identified. These included mungbean yellow mosaic India virus, mungbean yellow mosaic virus and pedilanthus leaf curl virus. Among the RNA and DNA viruses, cowpea mild mottle virus and mungbean yellow mosaic virus were the most abundant.
期刊介绍:
Australasian Plant Pathology presents new and significant research in all facets of the field of plant pathology. Dedicated to a worldwide readership, the journal focuses on research in the Australasian region, including Australia, New Zealand and Papua New Guinea, as well as the Indian, Pacific regions.
Australasian Plant Pathology is the official journal of the Australasian Plant Pathology Society.