模拟土壤碳动力学的微生物模型综述

IF 3.5 3区 环境科学与生态学 Q2 ENVIRONMENTAL SCIENCES
Aneesh Kumar Chandel, Lifen Jiang, Yiqi Luo
{"title":"模拟土壤碳动力学的微生物模型综述","authors":"Aneesh Kumar Chandel,&nbsp;Lifen Jiang,&nbsp;Yiqi Luo","doi":"10.1029/2023JG007436","DOIUrl":null,"url":null,"abstract":"<p>Soils store the largest amount of carbon (C) in the biosphere, and the C pool in soil is critical to the global C balance. Numerous microbial models have been developed over the last few decades to represent microbial processes that regulate the responses of soil organic carbon (SOC) to climate change. However, the representation of microbial processes varies, and how microbial processes are incorporated into SOC models has not been well explored. Here, we reviewed 71 microbial models to characterize the microbial processes incorporated into SOC models and analyzed variations in mechanistic complexity. We revealed that (a) four processes (microbial-mediated decomposition, mineral interaction, microbial necromass recycling, and active and dormant microbial dynamics) are commonly incorporated in microbial models, (b) ∼48% of models simulate only one microbial process (i.e., microbial-mediated decomposition) and 35% of models simulate two microbial processes: for example, microbial-mediated decomposition and mineral interaction, (c) more than 80% microbial models use nonlinear equations, such as forward Michaelis-Menten kinetics, to represent SOC decomposition, (d) the concept of persistence of SOC due to its intrinsic properties has been replaced by organo-mineral interaction (∼39% of microbial models) that protects SOC from decomposition, and (e) various temperature and moisture modifiers and pH effects have been used to explain the environmental effect on microbial processes. In the future, to realistically incorporate microbial processes into Earth System Models, it is imperative to identify experimental evidence on rate limitation processes and firmly ground model structure on the field and laboratory data.</p>","PeriodicalId":16003,"journal":{"name":"Journal of Geophysical Research: Biogeosciences","volume":"128 8","pages":""},"PeriodicalIF":3.5000,"publicationDate":"2023-07-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Microbial Models for Simulating Soil Carbon Dynamics: A Review\",\"authors\":\"Aneesh Kumar Chandel,&nbsp;Lifen Jiang,&nbsp;Yiqi Luo\",\"doi\":\"10.1029/2023JG007436\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Soils store the largest amount of carbon (C) in the biosphere, and the C pool in soil is critical to the global C balance. Numerous microbial models have been developed over the last few decades to represent microbial processes that regulate the responses of soil organic carbon (SOC) to climate change. However, the representation of microbial processes varies, and how microbial processes are incorporated into SOC models has not been well explored. Here, we reviewed 71 microbial models to characterize the microbial processes incorporated into SOC models and analyzed variations in mechanistic complexity. We revealed that (a) four processes (microbial-mediated decomposition, mineral interaction, microbial necromass recycling, and active and dormant microbial dynamics) are commonly incorporated in microbial models, (b) ∼48% of models simulate only one microbial process (i.e., microbial-mediated decomposition) and 35% of models simulate two microbial processes: for example, microbial-mediated decomposition and mineral interaction, (c) more than 80% microbial models use nonlinear equations, such as forward Michaelis-Menten kinetics, to represent SOC decomposition, (d) the concept of persistence of SOC due to its intrinsic properties has been replaced by organo-mineral interaction (∼39% of microbial models) that protects SOC from decomposition, and (e) various temperature and moisture modifiers and pH effects have been used to explain the environmental effect on microbial processes. In the future, to realistically incorporate microbial processes into Earth System Models, it is imperative to identify experimental evidence on rate limitation processes and firmly ground model structure on the field and laboratory data.</p>\",\"PeriodicalId\":16003,\"journal\":{\"name\":\"Journal of Geophysical Research: Biogeosciences\",\"volume\":\"128 8\",\"pages\":\"\"},\"PeriodicalIF\":3.5000,\"publicationDate\":\"2023-07-28\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Geophysical Research: Biogeosciences\",\"FirstCategoryId\":\"93\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1029/2023JG007436\",\"RegionNum\":3,\"RegionCategory\":\"环境科学与生态学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"ENVIRONMENTAL SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Geophysical Research: Biogeosciences","FirstCategoryId":"93","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1029/2023JG007436","RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ENVIRONMENTAL SCIENCES","Score":null,"Total":0}
引用次数: 0

摘要

土壤在生物圈中储存的碳量最大,土壤中的碳库对全球碳平衡至关重要。在过去的几十年里,已经开发了许多微生物模型来代表调节土壤有机碳(SOC)对气候变化反应的微生物过程。然而,微生物过程的代表性各不相同,如何将微生物过程纳入SOC模型尚未得到很好的探索。在这里,我们回顾了71个微生物模型,以表征SOC模型中包含的微生物过程,并分析了机制复杂性的变化。我们发现,(a)微生物模型中通常包含四个过程(微生物介导的分解、矿物相互作用、微生物尸体循环以及活跃和休眠微生物动力学),(b)~48%的模型只模拟一个微生物过程(即微生物介导分解),35%的模型模拟两个微生物过程:例如,微生物介导的分解和矿物相互作用,(c)超过80%的微生物模型使用非线性方程,如正向Michaelis-Menten动力学,来表示SOC分解,(d)由于其内在特性而导致的SOC持久性的概念已被保护SOC不分解的有机-矿物相互作用(~39%的微生物模型)所取代,以及(e)各种温度和湿度调节剂以及pH效应已被用于解释环境对微生物过程的影响。未来,为了将微生物过程真实地纳入地球系统模型,必须确定速率限制过程的实验证据,并在现场和实验室数据上牢固地建立模型结构。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Microbial Models for Simulating Soil Carbon Dynamics: A Review

Soils store the largest amount of carbon (C) in the biosphere, and the C pool in soil is critical to the global C balance. Numerous microbial models have been developed over the last few decades to represent microbial processes that regulate the responses of soil organic carbon (SOC) to climate change. However, the representation of microbial processes varies, and how microbial processes are incorporated into SOC models has not been well explored. Here, we reviewed 71 microbial models to characterize the microbial processes incorporated into SOC models and analyzed variations in mechanistic complexity. We revealed that (a) four processes (microbial-mediated decomposition, mineral interaction, microbial necromass recycling, and active and dormant microbial dynamics) are commonly incorporated in microbial models, (b) ∼48% of models simulate only one microbial process (i.e., microbial-mediated decomposition) and 35% of models simulate two microbial processes: for example, microbial-mediated decomposition and mineral interaction, (c) more than 80% microbial models use nonlinear equations, such as forward Michaelis-Menten kinetics, to represent SOC decomposition, (d) the concept of persistence of SOC due to its intrinsic properties has been replaced by organo-mineral interaction (∼39% of microbial models) that protects SOC from decomposition, and (e) various temperature and moisture modifiers and pH effects have been used to explain the environmental effect on microbial processes. In the future, to realistically incorporate microbial processes into Earth System Models, it is imperative to identify experimental evidence on rate limitation processes and firmly ground model structure on the field and laboratory data.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Journal of Geophysical Research: Biogeosciences
Journal of Geophysical Research: Biogeosciences Earth and Planetary Sciences-Paleontology
CiteScore
6.60
自引率
5.40%
发文量
242
期刊介绍: JGR-Biogeosciences focuses on biogeosciences of the Earth system in the past, present, and future and the extension of this research to planetary studies. The emerging field of biogeosciences spans the intellectual interface between biology and the geosciences and attempts to understand the functions of the Earth system across multiple spatial and temporal scales. Studies in biogeosciences may use multiple lines of evidence drawn from diverse fields to gain a holistic understanding of terrestrial, freshwater, and marine ecosystems and extreme environments. Specific topics within the scope of the section include process-based theoretical, experimental, and field studies of biogeochemistry, biogeophysics, atmosphere-, land-, and ocean-ecosystem interactions, biomineralization, life in extreme environments, astrobiology, microbial processes, geomicrobiology, and evolutionary geobiology
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信