通过分子对接、分子动力学模拟和ADMET研究,比较已批准的mpox药物和植物化学物质的结合能:一种计算机方法

Q1 Social Sciences
Ranjan K. Mohapatra , Ahmed Mahal , Azaj Ansari , Manjeet Kumar , Jyoti Prakash Guru , Ashish K. Sarangi , Aly Abdou , Snehasish Mishra , Mohammed Aljeldah , Bashayer M. AlShehail , Mohammed Alissa , Mohammed Garout , Ahmed Alsayyah , Ahmad A. Alshehri , Ahmed Saif , Abdulaziz Alqahtani , Fahd A. Alshehri , Aref A. Alamri , Ali A. Rabaan
{"title":"通过分子对接、分子动力学模拟和ADMET研究,比较已批准的mpox药物和植物化学物质的结合能:一种计算机方法","authors":"Ranjan K. Mohapatra ,&nbsp;Ahmed Mahal ,&nbsp;Azaj Ansari ,&nbsp;Manjeet Kumar ,&nbsp;Jyoti Prakash Guru ,&nbsp;Ashish K. Sarangi ,&nbsp;Aly Abdou ,&nbsp;Snehasish Mishra ,&nbsp;Mohammed Aljeldah ,&nbsp;Bashayer M. AlShehail ,&nbsp;Mohammed Alissa ,&nbsp;Mohammed Garout ,&nbsp;Ahmed Alsayyah ,&nbsp;Ahmad A. Alshehri ,&nbsp;Ahmed Saif ,&nbsp;Abdulaziz Alqahtani ,&nbsp;Fahd A. Alshehri ,&nbsp;Aref A. Alamri ,&nbsp;Ali A. Rabaan","doi":"10.1016/j.jobb.2023.09.001","DOIUrl":null,"url":null,"abstract":"<div><p>The mpox (previously monkeypox) outbreak in more than 100 non-endemic countries in 2022 posed a serious global health concern. Mpox is emerging as a global public health threat from a seemingly neglected disease. A42R profilin-like protein from mpox virus (PDB ID: 4QWO) could be a preferred target lead. The binding affinity of commonly used drugs/mAbs (tecovirimat, brincidofovir, cidofovir) for A42R profilin-like protein was examined <em>in silico</em> through molecular docking. Further, the results were compared with those of the phytochemicals curcumin, rutin, and theaflavin. Tecovirimat (−7.31 kcal/mol, IC<sub>50</sub> = 4.39 µM) and theaflavin (−6.99 kcal/mol, IC<sub>50</sub> = 7.54 µM) had the highest affinities. Molecular dynamics simulation of the theaflavin–4QWO complex was performed to ascertain the stability of ligand–protein interactions in natural charge, molecular electrostatic potential, and frontier molecular orbital analyses. The predicted QSAR and pharmacokinetic properties of all compounds were evaluated to find a suitable candidate for designing and developing new drugs. The evaluated log P values for brincidofovir and tecovirimat were higher than those of the other drugs in the QSAR study. Theaflavin had an impressive log P of 4.77, which hints at its high biological activity. The findings recommend further <em>in vitro</em> experimental validation to develop potential low-cost mpox therapies.</p></div>","PeriodicalId":52875,"journal":{"name":"Journal of Biosafety and Biosecurity","volume":"5 3","pages":"Pages 118-132"},"PeriodicalIF":0.0000,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"2","resultStr":"{\"title\":\"Comparison of the binding energies of approved mpox drugs and phytochemicals through molecular docking, molecular dynamics simulation, and ADMET studies: An in silico approach\",\"authors\":\"Ranjan K. Mohapatra ,&nbsp;Ahmed Mahal ,&nbsp;Azaj Ansari ,&nbsp;Manjeet Kumar ,&nbsp;Jyoti Prakash Guru ,&nbsp;Ashish K. Sarangi ,&nbsp;Aly Abdou ,&nbsp;Snehasish Mishra ,&nbsp;Mohammed Aljeldah ,&nbsp;Bashayer M. AlShehail ,&nbsp;Mohammed Alissa ,&nbsp;Mohammed Garout ,&nbsp;Ahmed Alsayyah ,&nbsp;Ahmad A. Alshehri ,&nbsp;Ahmed Saif ,&nbsp;Abdulaziz Alqahtani ,&nbsp;Fahd A. Alshehri ,&nbsp;Aref A. Alamri ,&nbsp;Ali A. Rabaan\",\"doi\":\"10.1016/j.jobb.2023.09.001\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>The mpox (previously monkeypox) outbreak in more than 100 non-endemic countries in 2022 posed a serious global health concern. Mpox is emerging as a global public health threat from a seemingly neglected disease. A42R profilin-like protein from mpox virus (PDB ID: 4QWO) could be a preferred target lead. The binding affinity of commonly used drugs/mAbs (tecovirimat, brincidofovir, cidofovir) for A42R profilin-like protein was examined <em>in silico</em> through molecular docking. Further, the results were compared with those of the phytochemicals curcumin, rutin, and theaflavin. Tecovirimat (−7.31 kcal/mol, IC<sub>50</sub> = 4.39 µM) and theaflavin (−6.99 kcal/mol, IC<sub>50</sub> = 7.54 µM) had the highest affinities. Molecular dynamics simulation of the theaflavin–4QWO complex was performed to ascertain the stability of ligand–protein interactions in natural charge, molecular electrostatic potential, and frontier molecular orbital analyses. The predicted QSAR and pharmacokinetic properties of all compounds were evaluated to find a suitable candidate for designing and developing new drugs. The evaluated log P values for brincidofovir and tecovirimat were higher than those of the other drugs in the QSAR study. Theaflavin had an impressive log P of 4.77, which hints at its high biological activity. The findings recommend further <em>in vitro</em> experimental validation to develop potential low-cost mpox therapies.</p></div>\",\"PeriodicalId\":52875,\"journal\":{\"name\":\"Journal of Biosafety and Biosecurity\",\"volume\":\"5 3\",\"pages\":\"Pages 118-132\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-09-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"2\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Biosafety and Biosecurity\",\"FirstCategoryId\":\"1093\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2588933823000407\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"Social Sciences\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Biosafety and Biosecurity","FirstCategoryId":"1093","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2588933823000407","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"Social Sciences","Score":null,"Total":0}
引用次数: 2

摘要

2022年在100多个非流行国家暴发的mpox(以前称为猴痘)造成了严重的全球卫生问题。麻疹是一种看似被忽视的疾病,正在成为全球公共卫生威胁。m痘病毒A42R型蛋白样蛋白(PDB ID: 4QWO)可能是优选的靶标先导物。通过分子对接,在计算机上检测常用药物/单克隆抗体(tecovirimat、brincidofovir、cidofovir)与A42R profin样蛋白的结合亲和力。并与植物化学物质姜黄素、芦丁和茶黄素进行了比较。Tecovirimat (- 7.31 kcal/mol, IC50 = 4.39µM)和茶黄素(- 6.99 kcal/mol, IC50 = 7.54µM)的亲和力最高。对茶黄素- 4qwo配合物进行了分子动力学模拟,以确定配体-蛋白相互作用在自然电荷、分子静电势和前沿分子轨道分析中的稳定性。对所有化合物的预测QSAR和药代动力学性质进行了评价,以寻找适合设计和开发新药的候选化合物。在QSAR研究中,brincidofovir和tecovirimat的评价log P值高于其他药物。茶黄素的对数P值高达4.77,表明其具有较高的生物活性。研究结果建议进一步进行体外实验验证,以开发潜在的低成本m痘疗法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Comparison of the binding energies of approved mpox drugs and phytochemicals through molecular docking, molecular dynamics simulation, and ADMET studies: An in silico approach

The mpox (previously monkeypox) outbreak in more than 100 non-endemic countries in 2022 posed a serious global health concern. Mpox is emerging as a global public health threat from a seemingly neglected disease. A42R profilin-like protein from mpox virus (PDB ID: 4QWO) could be a preferred target lead. The binding affinity of commonly used drugs/mAbs (tecovirimat, brincidofovir, cidofovir) for A42R profilin-like protein was examined in silico through molecular docking. Further, the results were compared with those of the phytochemicals curcumin, rutin, and theaflavin. Tecovirimat (−7.31 kcal/mol, IC50 = 4.39 µM) and theaflavin (−6.99 kcal/mol, IC50 = 7.54 µM) had the highest affinities. Molecular dynamics simulation of the theaflavin–4QWO complex was performed to ascertain the stability of ligand–protein interactions in natural charge, molecular electrostatic potential, and frontier molecular orbital analyses. The predicted QSAR and pharmacokinetic properties of all compounds were evaluated to find a suitable candidate for designing and developing new drugs. The evaluated log P values for brincidofovir and tecovirimat were higher than those of the other drugs in the QSAR study. Theaflavin had an impressive log P of 4.77, which hints at its high biological activity. The findings recommend further in vitro experimental validation to develop potential low-cost mpox therapies.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Journal of Biosafety and Biosecurity
Journal of Biosafety and Biosecurity Social Sciences-Linguistics and Language
CiteScore
6.00
自引率
0.00%
发文量
20
审稿时长
41 days
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信