Dama Dama(休耕鹿)新基因组序列的公布

Rebecca K. Barnard , Judith A. Smith , Na Yuan , Fan Liu , Syed Sibte Hadi
{"title":"Dama Dama(休耕鹿)新基因组序列的公布","authors":"Rebecca K. Barnard ,&nbsp;Judith A. Smith ,&nbsp;Na Yuan ,&nbsp;Fan Liu ,&nbsp;Syed Sibte Hadi","doi":"10.1016/j.fsiae.2023.100074","DOIUrl":null,"url":null,"abstract":"<div><p>This publication presents the genome for a male individual of <em>Dama dama</em> (Fallow deer). The Genome is 3108,385,535 bp in length with the sequence assembled in to 35 Chromosomes including an assembly of the X and Y allosomes. The final assembly also had a BUSCO completeness score of 96.4%. The annotated genome was found to consist of 22,619 genes, which are currently mostly all protein coding genes. The final BUSCO v4.1.4 completeness score for the annotation was 72%. Predicted genes have an average transcript length of 49,000 bp. On average each gene has 10 exons. Overall, the number of identified genes appeared lower than that expected for mammals (typically 20–30 K), however, these results can be expected due to the lack of additional RNA-seq data at this time, therefore not all non-coding genes have yet to be annotated. This project is the first to fully sequence the genome of a male <em>Dama dama</em> to reference genome level and provides the groundwork for further research involving this species. The result of this project not only aids to increase knowledge of the <em>Dama dama</em> genetic history but also benefits the welfare of the <em>Dama dama</em> species across the world, contributing to the global effort to combat wildlife crime.</p></div>","PeriodicalId":93435,"journal":{"name":"Forensic science international. Animals and environments","volume":"4 ","pages":"Article 100074"},"PeriodicalIF":0.0000,"publicationDate":"2023-10-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"An announcement of a new genome sequence available for Dama dama (fallow deer)\",\"authors\":\"Rebecca K. Barnard ,&nbsp;Judith A. Smith ,&nbsp;Na Yuan ,&nbsp;Fan Liu ,&nbsp;Syed Sibte Hadi\",\"doi\":\"10.1016/j.fsiae.2023.100074\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>This publication presents the genome for a male individual of <em>Dama dama</em> (Fallow deer). The Genome is 3108,385,535 bp in length with the sequence assembled in to 35 Chromosomes including an assembly of the X and Y allosomes. The final assembly also had a BUSCO completeness score of 96.4%. The annotated genome was found to consist of 22,619 genes, which are currently mostly all protein coding genes. The final BUSCO v4.1.4 completeness score for the annotation was 72%. Predicted genes have an average transcript length of 49,000 bp. On average each gene has 10 exons. Overall, the number of identified genes appeared lower than that expected for mammals (typically 20–30 K), however, these results can be expected due to the lack of additional RNA-seq data at this time, therefore not all non-coding genes have yet to be annotated. This project is the first to fully sequence the genome of a male <em>Dama dama</em> to reference genome level and provides the groundwork for further research involving this species. The result of this project not only aids to increase knowledge of the <em>Dama dama</em> genetic history but also benefits the welfare of the <em>Dama dama</em> species across the world, contributing to the global effort to combat wildlife crime.</p></div>\",\"PeriodicalId\":93435,\"journal\":{\"name\":\"Forensic science international. Animals and environments\",\"volume\":\"4 \",\"pages\":\"Article 100074\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-10-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Forensic science international. Animals and environments\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2666937423000124\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Forensic science international. Animals and environments","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2666937423000124","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

这篇出版物展示了一只成年鹿(法洛鹿)的雄性个体的基因组。基因组长度为3108385535bp,序列组装成35个染色体,包括X和Y等位体的组装。最终组装的BUSCO完整性得分为96.4%。注释基因组由22619个基因组成,这些基因目前大多都是蛋白质编码基因。BUSCO v4.4.4版注释的最终完整性得分为72%。预测基因的平均转录长度为49000bp。平均每个基因有10个外显子。总体而言,已鉴定基因的数量似乎低于哺乳动物的预期(通常为20-30 K),然而,由于目前缺乏额外的RNA-seq数据,这些结果是可以预期的,因此并非所有非编码基因都需要注释。该项目是第一个将雄性大马士革马的基因组完全测序到参考基因组水平的项目,并为该物种的进一步研究奠定了基础。该项目的成果不仅有助于增加对达玛达玛遗传史的了解,而且有利于世界各地达玛达马物种的福利,为全球打击野生动物犯罪的努力做出贡献。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
An announcement of a new genome sequence available for Dama dama (fallow deer)

This publication presents the genome for a male individual of Dama dama (Fallow deer). The Genome is 3108,385,535 bp in length with the sequence assembled in to 35 Chromosomes including an assembly of the X and Y allosomes. The final assembly also had a BUSCO completeness score of 96.4%. The annotated genome was found to consist of 22,619 genes, which are currently mostly all protein coding genes. The final BUSCO v4.1.4 completeness score for the annotation was 72%. Predicted genes have an average transcript length of 49,000 bp. On average each gene has 10 exons. Overall, the number of identified genes appeared lower than that expected for mammals (typically 20–30 K), however, these results can be expected due to the lack of additional RNA-seq data at this time, therefore not all non-coding genes have yet to be annotated. This project is the first to fully sequence the genome of a male Dama dama to reference genome level and provides the groundwork for further research involving this species. The result of this project not only aids to increase knowledge of the Dama dama genetic history but also benefits the welfare of the Dama dama species across the world, contributing to the global effort to combat wildlife crime.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Forensic science international. Animals and environments
Forensic science international. Animals and environments Pollution, Law, Forensic Medicine, Veterinary Science and Veterinary Medicine (General)
CiteScore
2.00
自引率
0.00%
发文量
0
审稿时长
142 days
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信